RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 LSG1Q9H089 658 aaKnown RBP2.19□□□□□ -2.06
VPS50-216ENST00000484954 VIPAS39Q9H9C1 493 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 IL1RL2Q9HB29 575 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 GPR132Q9UNW8 380 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 OR1A2Q9Y585 309 aa2.19□□□□□ -2.06
VPS50-216ENST00000484954 NME6O75414 186 aaPredicted RBP2.18□□□□□ -2.06
VPS50-216ENST00000484954 LETM1O95202 739 aaPredicted RBP2.18□□□□□ -2.06
VPS50-216ENST00000484954 RLN1P04808 185 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 EZRP15311 586 aaKnown RBP2.18□□□□□ -2.06
VPS50-216ENST00000484954 GLRA1P23415 457 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 PPP2R1AP30153 589 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 MTIF2P46199 727 aaKnown RBP2.18□□□□□ -2.06
VPS50-216ENST00000484954 KHDRBS2Q5VWX1 349 aaKnown RBP2.18□□□□□ -2.06
VPS50-216ENST00000484954 FBXW8Q8N3Y1 598 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 CHDHQ8NE62 594 aaPredicted RBP2.18□□□□□ -2.06
VPS50-216ENST00000484954 OR4F5Q8NH21 305 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 U2AF1L4Q8WU68 220 aaKnown RBP2.18□□□□□ -2.06
VPS50-216ENST00000484954 MRPL24Q96A35 216 aaKnown RBP2.18□□□□□ -2.06
VPS50-216ENST00000484954 PNPLA2Q96AD5 504 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 RASL10BQ96S79 203 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 TTYH2Q9BSA4 534 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 IKZF5Q9H5V7 419 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 GPR173Q9NS66 373 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 EXOC6BQ9Y2D4 811 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 PLEKHA6Q9Y2H5 1048 aa2.18□□□□□ -2.06
VPS50-216ENST00000484954 TRIOBPQ9H2D6 2365 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 IGHV3-35A0A0C4DH35 117 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 ATP6AP2A0A1C7CYW4 349 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 KBTBD13C9JR72 458 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 M0R296 226 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 TNFSF11O14788 317 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 CSDE1O75534 798 aaKnown RBP2.17□□□□□ -2.06
VPS50-216ENST00000484954 SIX3O95343 332 aaPredicted RBP2.17□□□□□ -2.06
VPS50-216ENST00000484954 FCGR3AP08637 254 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 P0C879 139 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 CD1EP15812 388 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 GPX3P22352 226 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 CCND3P30281 292 aaPredicted RBP2.17□□□□□ -2.06
VPS50-216ENST00000484954 RGRP47804 291 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 PSMD6Q15008 389 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 PPP1R3AQ16821 1122 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 ANKRD55Q3KP44 614 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 IQCCQ4KMZ1 466 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 UNC50Q53HI1 259 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 ZNF530Q6P9A1 599 aaPredicted RBP2.17□□□□□ -2.06
VPS50-216ENST00000484954 IGFL2Q6UWQ7 119 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 AQP12AQ8IXF9 295 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 CCDC197Q8NCU1 140 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 DNASE1L2Q92874 299 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 RAB3IPQ96QF0 476 aaPredicted RBP2.17□□□□□ -2.06
VPS50-216ENST00000484954 RAB40CQ96S21 281 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 CCT8L2Q96SF2 557 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 ZNF559Q9BR84 538 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 AMBNQ9NP70 447 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 PFDN4Q9NQP4 134 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 TAS2R16Q9NYV7 291 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 MLXQ9UH92 298 aa2.17□□□□□ -2.06
VPS50-216ENST00000484954 TRAV34A0A0B4J273 112 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 WI2-2373I1.2A0A1W2PRP0 233 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 SH3PXD2BA1X283 911 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 YDJCA8MPS7 323 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 ANXA9O76027 345 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 SLC35E2P0CK97 266 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 P4HA1P13674 534 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 GP5P40197 560 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 SLC25A1P53007 311 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 CKAP4Q07065 602 aaKnown RBP2.16□□□□□ -2.06
VPS50-216ENST00000484954 MFGE8Q08431 387 aaPredicted RBP2.16□□□□□ -2.06
VPS50-216ENST00000484954 ISXQ2M1V0 245 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 WSCD2Q2TBF2 565 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 HERC4Q5GLZ8 1057 aaPredicted RBP2.16□□□□□ -2.06
VPS50-216ENST00000484954 FAM219BQ5XKK7 198 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 WSCD1Q658N2 575 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 ALKBH5Q6P6C2 394 aaKnown RBP2.16□□□□□ -2.06
VPS50-216ENST00000484954 ABRAXAS1Q6UWZ7 409 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 CLEC4GQ6UXB4 293 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 LAX1Q8IWV1 398 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 RELL2Q8NC24 303 aaPredicted RBP2.16□□□□□ -2.06
VPS50-216ENST00000484954 CKAP2Q8WWK9 683 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 CORO2AQ92828 525 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 SNRNP40Q96DI7 357 aaKnown RBP2.16□□□□□ -2.06
VPS50-216ENST00000484954 RBM18Q96H35 190 aaKnown RBP2.16□□□□□ -2.06
VPS50-216ENST00000484954 VSIG2Q96IQ7 327 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 SERINC2Q96SA4 455 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 ACPTQ9BZG2 426 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 ABCC13Q9NSE7 274 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 SLCO1C1Q9NYB5 712 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 PLEK2Q9NYT0 353 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 PSORS1C1Q9UIG5 152 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 ABCG2Q9UNQ0 655 aa2.16□□□□□ -2.06
VPS50-216ENST00000484954 RNF212BA8MTL3 300 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 H7C0S8 307 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 SYT7O43581 403 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 KIAA0513O60268 411 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 DKC1O60832 514 aaKnown RBP eCLIP2.15□□□□□ -2.07
VPS50-216ENST00000484954 TSPY3P0CV98 308 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 TSPY8P0CW00 308 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 HSD17B1P14061 328 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 PGAM2P15259 253 aa2.15□□□□□ -2.07
VPS50-216ENST00000484954 MAGEA9P43362 315 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms