RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 RETREG3Q86VR2 466 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 KIAA2013Q8IYS2 634 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 LRRC25Q8N386 305 aaPredicted RBP9.58□□□□□ -0.88
USP39-215ENST00000481409 AMER3Q8N944 861 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 DEFB124Q8NES8 71 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 OR51Q1Q8NH59 317 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 POP5Q969H6 163 aaKnown RBP9.58□□□□□ -0.88
USP39-215ENST00000481409 MCUR1Q96AQ8 359 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 BBS4Q96RK4 519 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 CGREF1Q99674 301 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 NPAS2Q99743 824 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 GPATCH1Q9BRR8 931 aaKnown RBP9.58□□□□□ -0.88
USP39-215ENST00000481409 SPATA9Q9BWV2 254 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 SLC26A1Q9H2B4 701 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 SERHLQ9NQF3 203 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 SEMA3GQ9NS98 782 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 OCIAD1Q9NX40 245 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 THUMPD1Q9NXG2 353 aaKnown RBP9.58□□□□□ -0.88
USP39-215ENST00000481409 ABCD2Q9UBJ2 740 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 NDOR1Q9UHB4 597 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 VPS4AQ9UN37 437 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 LOXL2Q9Y4K0 774 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 PCDHGA8Q9Y5G5 932 aa9.58□□□□□ -0.88
USP39-215ENST00000481409 TRBV5-3A0A0A0MS03 114 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 EVPLLA8MZ36 301 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 PLD2O14939 933 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 GSC2O15499 205 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 KRT75O95678 551 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 ATP1B1P05026 303 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 FHP07954 510 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 JMJD7P0C870 316 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 SLC35E2P0CK97 266 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 PORP16435 677 aaPredicted RBP9.57□□□□□ -0.88
USP39-215ENST00000481409 ITGAXP20702 1163 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 UQCRC2P22695 453 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 CD82P27701 267 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 CPA2P48052 419 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 ANXA11P50995 505 aaKnown RBP9.57□□□□□ -0.88
USP39-215ENST00000481409 PSME3P61289 254 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 IGLV3-21P80748 117 aaPredicted RBP9.57□□□□□ -0.88
USP39-215ENST00000481409 SHC2P98077 582 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 NKAIN1Q4KMZ8 207 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 PAGE3Q5JUK9 113 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 ARHGAP40Q5TG30 622 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 HES3Q5TGS1 186 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 CPZQ66K79 652 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 C18orf63Q68DL7 685 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 SLC2A7Q6PXP3 512 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 BNC2Q6ZN30 1099 aaPredicted RBP9.57□□□□□ -0.88
USP39-215ENST00000481409 PRSS41Q7RTY9 318 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 DEFB107AQ8IZN7 70 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 TNIP2Q8NFZ5 429 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 OR4A15Q8NGL6 344 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 SFXN5Q8TD22 340 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 COL26A1Q96A83 441 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 CLIP3Q96DZ5 547 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 ZNF681Q96N22 645 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 ANKRD27Q96NW4 1050 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 PAIP1Q9H074 479 aaKnown RBP9.57□□□□□ -0.88
USP39-215ENST00000481409 MUC13Q9H3R2 512 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 WDR54Q9H977 334 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 BCAP29Q9UHQ4 241 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 CDV3Q9UKY7 258 aaKnown RBP9.57□□□□□ -0.88
USP39-215ENST00000481409 PCDHGA7Q9Y5G6 932 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 WDFY4Q6ZS81 3184 aa9.57□□□□□ -0.88
USP39-215ENST00000481409 A0A087WV62 115 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ZNF860A6NHJ4 632 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 FXYD1O00168 92 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 MEN1O00255 615 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 PLOD2O00469 737 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 PGRMC2O15173 223 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 NVLO15381 856 aaKnown RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 GFRA3O60609 400 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ERAL1O75616 437 aaKnown RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 BCAS2O75934 225 aaPredicted RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 MED26O95402 600 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 CTSBP07858 339 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ABCB1P08183 1280 aaPredicted RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 CPMP14384 443 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 HOXB9P17482 250 aaPredicted RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 SLC6A2P23975 617 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 XCR1P46094 333 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 XKP51811 444 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 NCBP2P52298 156 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP39-215ENST00000481409 EEFSECP57772 596 aaKnown RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 PRR5P85299 388 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 SLC25A3Q00325 362 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 PLIN5Q00G26 463 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 OCA2Q04671 838 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 FADDQ13158 208 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 MPEG1Q2M385 716 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ZNF385BQ569K4 471 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 RUNDC3AQ59EK9 446 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ZNF385CQ66K41 422 aaPredicted RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 NANOGP8Q6NSW7 305 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 IGF2-ASQ6U949 168 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 DHRS13Q6UX07 377 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ZNF517Q6ZMY9 492 aaPredicted RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 OVCH1Q7RTY7 1134 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 SLCO6A1Q86UG4 719 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms