RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 DNAJC22Q8N4W6 341 aa11.58□□□□□ -0.55
PTPRF-212ENST00000477970 C2orf73Q8N5S3 287 aaPredicted RBP11.58□□□□□ -0.55
PTPRF-212ENST00000477970 TBC1D19Q8N5T2 526 aa11.58□□□□□ -0.55
PTPRF-212ENST00000477970 MIPOL1Q8TD10 442 aa11.58□□□□□ -0.55
PTPRF-212ENST00000477970 ZNF556Q9HAH1 456 aa11.58□□□□□ -0.55
PTPRF-212ENST00000477970 ANKHQ9HCJ1 492 aa11.58□□□□□ -0.55
PTPRF-212ENST00000477970 TBC1D23Q9NUY8 699 aa11.58□□□□□ -0.55
PTPRF-212ENST00000477970 SH3D21A4FU49 640 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 C5orf58C9J3I9 102 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 HMGN4O00479 90 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 LCMT2O60294 686 aaKnown RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 B4GALT2O60909 372 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 GADD45GO95257 159 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 LAMP2P13473 410 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 GDI1P31150 447 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 HYAL2Q12891 473 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 BNIP3Q12983 259 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 SPCS2Q15005 226 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 CEBPEQ15744 281 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 DUS1LQ6P1R4 473 aaKnown RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 KLHL35Q6PF15 583 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 TMEM19Q96HH6 336 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 ZNF354BQ96LW1 612 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 TEFMQ96QE5 360 aaKnown RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 APOOQ9BUR5 198 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 TRMT61BQ9BVS5 477 aaKnown RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 CCDC90BQ9GZT6 254 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 AICDAQ9GZX7 198 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 BCL2L10Q9HD36 194 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 CFAP20Q9Y6A4 193 aaKnown RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 CLCA1A8K7I4 914 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 RTCAO00442 366 aaKnown RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 RNGTTO60942 597 aaKnown RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 ADAP00813 363 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 KCNJ5P48544 419 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 GALK1P51570 392 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 CYP4F2P78329 520 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 PUM1Q14671 1186 aaKnown RBP eCLIP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 Q6ZNX1 250 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 P3H2Q8IVL5 708 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 DNASE1L2Q92874 299 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 ZNF607Q96SK3 696 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 MYOCQ99972 504 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 NIPSNAP1Q9BPW8 284 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 KXD1Q9BQD3 176 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 FUZQ9BT04 418 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 P2RX2Q9UBL9 471 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 FTSJ1Q9UET6 329 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 GPC6Q9Y625 555 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 TICRRQ7Z2Z1 1910 aa11.58□□□□□ -0.56
PTPRF-212ENST00000477970 NUP214P35658 2090 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-212ENST00000477970 ZAR1LA6NP61 321 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 MAN2B1O00754 1011 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 SLITRK5O94991 958 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 PAK4O96013 591 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 CDK1P06493 297 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 ZNF12P17014 697 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 NTSR1P30989 418 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 OR1E2P47887 323 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 ANXA11P50995 505 aaKnown RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 ADPRHP54922 357 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 SMIM11AP58511 58 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 TOR1AIP1Q5JTV8 583 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 P2RY8Q86VZ1 359 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 MFSD9Q8NBP5 474 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 SRFBP1Q8NEF9 429 aaKnown RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 OR52E1Q8NGJ3 308 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 EZH1Q92800 747 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 RIPOR3Q96MK2 946 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 AMDHD1Q96NU7 426 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 KCNC2Q96PR1 638 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 SLC6A20Q9NP91 592 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 MRPS30Q9NP92 439 aaKnown RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 TEX10Q9NXF1 929 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 ZNF226Q9NYT6 803 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 RAB23Q9ULC3 237 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 A0A1W2PQU0 124 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 TNFRSF1BP20333 461 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 NDUFS1P28331 727 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 TGFBR2P37173 567 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 BCL6P41182 706 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 CCT3P49368 545 aaKnown RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 SMN1Q16637 294 aaKnown RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 ZNF425Q6IV72 752 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 PARM1Q6UWI2 310 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 USP30Q70CQ3 517 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 GPR32P1Q8NGA4 272 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 BBS10Q8TAM1 723 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 MS4A6EQ96DS6 147 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 DACH2Q96NX9 599 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 DPH7Q9BTV6 452 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 BTBD2Q9BX70 525 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 TMEM121BQ9BXQ6 578 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 ZDHHC4Q9NPG8 344 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 SLC35C2Q9NQQ7 365 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 PRDM9Q9NQV7 894 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 RLIMQ9NVW2 624 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 FBXL12Q9NXK8 326 aa11.57□□□□□ -0.56
PTPRF-212ENST00000477970 CNOT2Q9NZN8 540 aaKnown RBP11.57□□□□□ -0.56
PTPRF-212ENST00000477970 PCOLCE2Q9UKZ9 415 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms