RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PROM1O43490 865 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 HS6ST1O60243 411 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 TNNI3P19429 210 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 PTX3P26022 381 aaPredicted RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 STT3AP46977 705 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 PIK3CGP48736 1102 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 TNFRSF17Q02223 184 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 CUL3Q13618 768 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 CPSF6Q16630 551 aaKnown RBP eCLIP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 METTL2BQ6P1Q9 378 aaKnown RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 IL20RBQ6UXL0 311 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 MYLK4Q86YV6 388 aaPredicted RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 GPALPP1Q8IXQ4 340 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 TMEM151AQ8N4L1 468 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 PTGR2Q8N8N7 351 aaPredicted RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 PSD4Q8NDX1 1056 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 OR52N2Q8NGI0 321 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 IFT81Q8WYA0 676 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 MARVELD3Q96A59 401 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 PPWD1Q96BP3 646 aaKnown RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 SENP5Q96HI0 755 aaPredicted RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 NSUN5Q96P11 429 aaKnown RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 CDK15Q96Q40 435 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 DMRTA2Q96SC8 542 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 FMO2Q99518 471 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 RPF2Q9H7B2 306 aaKnown RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 DDX31Q9H8H2 851 aaKnown RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 TNPO3Q9Y5L0 923 aaKnown RBP17.21■□□□□ 0.35
COL7A1-209ENST00000474432 DNAJC13O75165 2243 aa17.21■□□□□ 0.35
COL7A1-209ENST00000474432 A0A1B0GTL3 188 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 A0A1W2PR48 441 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 A8MVJ9 347 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 HNRNPRO43390 633 aaKnown RBP17.2■□□□□ 0.34
COL7A1-209ENST00000474432 RAP1GDS1P52306 607 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 CASP6P55212 293 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 FOLH1Q04609 750 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 TRAF3Q13114 568 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 ZNF630Q2M218 657 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-209ENST00000474432 ZNF750Q32MQ0 723 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 KLC3Q6P597 504 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 DOK4Q8TEW6 326 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 AGAP11Q8TF27 550 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 ASB15Q8WXK1 588 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 ZNF592Q92610 1267 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 SCYL1Q96KG9 808 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 NOL11Q9H8H0 719 aaKnown RBP17.2■□□□□ 0.34
COL7A1-209ENST00000474432 TIMMDC1Q9NPL8 285 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 HPF1Q9NWY4 346 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 MS4A12Q9NXJ0 267 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 XPR1Q9UBH6 696 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 PCTPQ9UKL6 214 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 PPT2Q9UMR5 302 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 ERVK-11Q9UQG0 969 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 SPACA6W5XKT8 324 aa17.2■□□□□ 0.34
COL7A1-209ENST00000474432 CSMD1Q96PZ7 3565 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 A0A1B0GTH9 108 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 FOXE1O00358 373 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-209ENST00000474432 TFECO14948 347 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-209ENST00000474432 CLDN9O95484 217 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 NADKO95544 446 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-209ENST00000474432 TUBB4AP04350 444 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 INHBAP08476 426 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 ABOP16442 354 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 AGAP20933 346 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 HTR1EP28566 365 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 GCAP28676 217 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 FAM219BQ5XKK7 198 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 XKRXQ6PP77 449 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 LYPD8Q6UX82 237 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 C3P1Q6ZMU1 363 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 CEP128Q6ZU80 1094 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 C9orf40Q8IXQ3 194 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 OR2M7Q8NG81 312 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 UHMK1Q8TAS1 419 aaKnown RBP17.19■□□□□ 0.34
COL7A1-209ENST00000474432 TANKQ92844 425 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 PHF21BQ96EK2 531 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 NTMT1Q9BV86 223 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 TSPYL1Q9H0U9 437 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 PHF11Q9UIL8 331 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 ZNF180Q9UJW8 692 aa17.19■□□□□ 0.34
COL7A1-209ENST00000474432 A0A1W2PS29 197 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 TRIM49D1C9J1S8 452 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 STX16-NPEPL1H3BU86 382 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 PPP6CO00743 305 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 STX16O14662 325 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 GLSO94925 669 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-209ENST00000474432 CLPSP04118 112 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 RBP1P09455 135 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 FAM58BPP0C7Q3 252 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 ESRRAP11474 423 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-209ENST00000474432 COL6A2P12110 1019 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 SERPINB9P50453 376 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 MPEG1Q2M385 716 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 GLE1Q53GS7 698 aaKnown RBP17.18■□□□□ 0.34
COL7A1-209ENST00000474432 PIGGQ5H8A4 983 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 ADGRD1Q6QNK2 874 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 RPS27LQ71UM5 84 aaKnown RBP17.18■□□□□ 0.34
COL7A1-209ENST00000474432 PHF10Q8WUB8 498 aaKnown RBP17.18■□□□□ 0.34
COL7A1-209ENST00000474432 REPS1Q96D71 796 aa17.18■□□□□ 0.34
COL7A1-209ENST00000474432 DGAT2Q96PD7 388 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms