RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 NEUROG2Q9H2A3 272 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 CXCL16Q9H2A7 254 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 PDCL3Q9H2J4 239 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 PARLQ9H300 379 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 TUBB1Q9H4B7 451 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 DHX33Q9H6R0 707 aaKnown RBP1.35□□□□□ -2.19
CCDC39-203ENST00000473854 ATP13A3Q9H7F0 1226 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 MINDY3Q9H8M7 445 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 ZNF302Q9NR11 478 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 OLA1Q9NTK5 396 aaKnown RBP1.35□□□□□ -2.19
CCDC39-203ENST00000473854 ANKEF1Q9NU02 776 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 TBC1D22BQ9NU19 505 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 AIPL1Q9NZN9 384 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 CGNQ9P2M7 1197 aaKnown RBP1.35□□□□□ -2.19
CCDC39-203ENST00000473854 MORF4L1Q9UBU8 362 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 CRCT1Q9UGL9 99 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 HMGXB4Q9UGU5 601 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 FBXL5Q9UKA1 691 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 DNAJC12Q9UKB3 198 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 GUCA1BQ9UMX6 200 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 SNX12Q9UMY4 172 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 HYOU1Q9Y4L1 999 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 KCNE2Q9Y6J6 123 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 EML5Q05BV3 1969 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 SEC16AO15027 2179 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 RP1P56715 2156 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 PASKQ96RG2 1323 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 FER1L5A0AVI2 2057 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 CMYA5Q8N3K9 4069 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 COL4A2P08572 1712 aa1.35□□□□□ -2.19
CCDC39-203ENST00000473854 ASCC3Q8N3C0 2202 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 LOC105371242A0A075B767 164 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 LOC101059948A0A1B0GTJ6 334 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 A0A1W2PRB8 838 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 MED19A0JLT2 244 aaPredicted RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CTAGE15A4D2H0 777 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 ZNF840PA6NDX5 716 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 PGPEP1LA6NFU8 196 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 LRRIQ4A6NIV6 560 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CCDC169A6NNP5 214 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 TMCO5BA8MYB1 307 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 PDHXO00330 501 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 MAPK13O15264 365 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 HDAC3O15379 428 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 P4HA2O15460 535 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 RAD51CO43502 376 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 HCRTO43612 131 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 TSPAN1O60635 241 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 GALR3O60755 368 aaPredicted RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 TMCC2O75069 709 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 N4BP1O75113 896 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CSDE1O75534 798 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 RNASEH2AO75792 299 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 TMEM63AO94886 807 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CELF2O95319 508 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 SLC25A27O95847 323 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 SNAI1O95863 264 aaPredicted RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 ASS1P00966 412 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 HLA-DRAP01903 254 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 VTNP04004 478 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 HIST1H2ABP04908 130 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CXCL8P10145 99 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 DLATP10515 647 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 RARGP13631 454 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CYP11B1P15538 503 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 TCF4P15884 667 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 FERP16591 822 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 ZNF19P17023 458 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 HIST1H2ADP20671 130 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CYP3A5P20815 502 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 ANXA13P27216 316 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 OAS2P29728 719 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 MAN1A1P33908 653 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 NF2P35240 595 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 COPB2P35606 906 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 BSGP35613 385 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 MSH2P43246 934 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 MAGEA1P43355 309 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 ACOT2P49753 483 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 LIG4P49917 911 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 GPC3P51654 580 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 GALCP54803 685 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 SNRPFP62306 86 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 NOP14P78316 857 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CBX1P83916 185 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 OGDHQ02218 1023 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CKAP4Q07065 602 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 KLHL30Q0D2K2 578 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 LAMTOR4Q0VGL1 99 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CSTF3Q12996 717 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 GAGE2BQ13066 116 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 PLA2G7Q13093 441 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 PRPF4BQ13523 1007 aaKnown RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CUL2Q13617 745 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 SIM2Q14190 667 aaPredicted RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 KCTD2Q14681 263 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 CASP8Q14790 479 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 PSMD6Q15008 389 aa1.34□□□□□ -2.19
CCDC39-203ENST00000473854 SIX1Q15475 284 aaPredicted RBP1.34□□□□□ -2.19
CCDC39-203ENST00000473854 MED22Q15528 200 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms