RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ADAMTS18Q8TE60 1221 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 FHP07954 510 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 SFTPBP07988 381 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 LAG3P18627 525 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 CASP7P55210 303 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 GPX6P59796 221 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 MC2RQ01718 297 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 HFE2Q6ZVN8 426 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 DCUN1D3Q8IWE4 304 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 TRIB2Q92519 343 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 TMEM39AQ9NV64 488 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 DMAC2Q9NW81 257 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 CDK3Q00526 305 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 GPR139Q6DWJ6 353 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 CEP68Q76N32 757 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 PTGES2Q9H7Z7 377 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 ICKQ9UPZ9 632 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 ADAP00813 363 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 MTNR1AP48039 350 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF41P51814 821 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-209ENST00000472056 TRMT10BQ6PF06 316 aaKnown RBP12.8□□□□□ -0.36
COL6A3-209ENST00000472056 BLOC1S3Q6QNY0 202 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 RGL4Q8IZJ4 473 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 HMX3A6NHT5 357 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 A8MVJ9 347 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 PSMD9O00233 223 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 CD34P28906 385 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 GHRHRQ02643 423 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 SLBPQ14493 270 aaKnown RBP eCLIP12.8□□□□□ -0.36
COL6A3-209ENST00000472056 TEX26Q8N6G2 289 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 TCEANCQ8N8B7 351 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 SNX27Q96L92 541 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 REEP4Q9H6H4 257 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 RXFP3Q9NSD7 469 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 HEATR5BQ9P2D3 2071 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 DLX3O60479 287 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 TNFSF9P41273 254 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 RAB11BQ15907 218 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 DUSP28Q4G0W2 176 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 FBXL20Q96IG2 436 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 PPIL3Q9H2H8 161 aaKnown RBP12.8□□□□□ -0.36
COL6A3-209ENST00000472056 NOX1Q9Y5S8 564 aa12.8□□□□□ -0.36
COL6A3-209ENST00000472056 MDC1Q14676 2089 aaKnown RBP12.8□□□□□ -0.36
COL6A3-209ENST00000472056 WDPCPO95876 746 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 CASP9P55211 416 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 GAD2Q05329 585 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 NLGN2Q8NFZ4 835 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 RSC1A1Q92681 617 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 PWWP2AQ96N64 755 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TGM7Q96PF1 710 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 RNF121Q9H920 327 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 SLC28A3Q9HAS3 691 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 NFS1Q9Y697 457 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 DOCK11Q5JSL3 2073 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 KCNC1P48547 511 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 PLA2G16P53816 162 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 DAOAP59103 153 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 DPY19L2P1Q6NXN4 242 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TMIGD1Q6UXZ0 262 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 GAREM2Q75VX8 874 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 OR4F6Q8NGB9 312 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 NFKBIDQ8NI38 313 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 ANKMY1Q9P2S6 941 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 MAFBQ9Y5Q3 323 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 ALDH3B1P43353 468 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 GPC2Q8N158 579 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 THEM6Q8WUY1 208 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 SLC5A11Q8WWX8 675 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF578Q96N58 590 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TSGA13Q96PP4 275 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 SMOC2Q9H3U7 446 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 C20orf202A1L168 122 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 F5H5P2 479 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 WNT10BO00744 389 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 OR56B2PQ8NGI1 322 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 THAP4Q8WY91 577 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 HDHD5Q9BXW7 423 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 ABCG4Q9H172 646 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 DDX4Q9NQI0 724 aaKnown RBP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 A0A1B0GUL6 1792 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 D6RAR5 112 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 GMDSO60547 372 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 HOXA9P31269 272 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 RRAS2P62070 204 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 CEACAM19Q7Z692 300 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 LRRTM4Q86VH4 590 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 FBXO22Q8NEZ5 403 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 SIAEQ9HAT2 523 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 CNOT2Q9NZN8 540 aaKnown RBP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 GHRLQ9UBU3 117 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 OARD1Q9Y530 152 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TRBV2A0A0J9YWF9 115 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 PIGRP01833 764 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TP53P04637 393 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF35P13682 527 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TMEM220Q6QAJ8 160 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 FAM109AQ8N4B1 249 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 LILRB4Q8NHJ6 448 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 ARNTL2Q8WYA1 636 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms