RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	DTD2	Q96FN9	168 aa		3.13	□□□□□ -1.91
PTCD3-209	ENST00000472044	PCED1B	Q96HM7	432 aa		3.13	□□□□□ -1.91
PTCD3-209	ENST00000472044	ATF6B	Q99941	703 aa		3.13	□□□□□ -1.91
PTCD3-209	ENST00000472044	TEX13A	Q9BXU3	409 aa	Predicted RBP	3.13	□□□□□ -1.91
PTCD3-209	ENST00000472044	CARD9	Q9H257	536 aa		3.13	□□□□□ -1.91
PTCD3-209	ENST00000472044	WDR41	Q9HAD4	459 aa		3.13	□□□□□ -1.91
PTCD3-209	ENST00000472044	PLEKHA3	Q9HB20	300 aa		3.13	□□□□□ -1.91
PTCD3-209	ENST00000472044	FAM212B	Q9NTI7	297 aa	Predicted RBP	3.13	□□□□□ -1.91
PTCD3-209	ENST00000472044	GPRASP1	Q5JY77	1395 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	PTPRU	Q92729	1446 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	RAD54L2	Q9Y4B4	1467 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	YJEFN3	A6XGL0	299 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	ZNF724	A8MTY0	619 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044		A8MXK9	166 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CS	O75390	466 aa	Known RBP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	OR6B1	O95007	311 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	POP4	O95707	220 aa	Known RBP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	PDGFB	P01127	241 aa	Predicted RBP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	APRT	P07741	180 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	TPBGL	P0DKB5	382 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	ADORA3	P0DMS8	318 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	PPP2R1A	P30153	589 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CAPG	P40121	348 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	TNFRSF4	P43489	277 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CASP9	P55211	416 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	RPL27	P61353	136 aa	Known RBP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CDKL1	Q00532	357 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	GFPT1	Q06210	699 aa	Predicted RBP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	PAX8	Q06710	450 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	SLC17A1	Q14916	467 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	KRT31	Q15323	416 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	POM121L1P	Q3SYA9	428 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	NKAIN2	Q5VXU1	208 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CDHR3	Q6ZTQ4	885 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	RPAIN	Q86UA6	219 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	ITIH5	Q86UX2	942 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	KCNMB4	Q86W47	210 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	RNF130	Q86XS8	419 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	LMNTD2	Q8IXW0	634 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	OR1B1	Q8NGR6	318 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	URGCP	Q8TCY9	931 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	MIPOL1	Q8TD10	442 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	TAF15	Q92804	592 aa	Known RBP eCLIP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CCDC47	Q96A33	483 aa	Known RBP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	RAB39B	Q96DA2	213 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	MRPL53	Q96EL3	112 aa	Known RBP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CDHR1	Q96JP9	859 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	RPGRIP1	Q96KN7	1286 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CAPNS2	Q96L46	248 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	RUNDC3B	Q96NL0	473 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	RCHY1	Q96PM5	261 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	VGLL1	Q99990	258 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	DCTN5	Q9BTE1	182 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	OCR1	Q9BZK8	76 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	STRADB	Q9C0K7	418 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	CXXC4	Q9H2H0	198 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	DCLRE1B	Q9H816	532 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	MOB1A	Q9H8S9	216 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	GDF3	Q9NR23	364 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	DEPP	Q9NTK1	212 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	ANO10	Q9NW15	660 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	MOSPD1	Q9UJG1	213 aa		3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	MRTO4	Q9UKD2	239 aa	Known RBP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044	NIP7	Q9Y221	180 aa	Known RBP eCLIP	3.12	□□□□□ -1.91
PTCD3-209	ENST00000472044		A0A0U1RQG5	324 aa	Predicted RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	SH3PXD2B	A1X283	911 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	MACROD2	A1Z1Q3	448 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	IGLON5	A6NGN9	336 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	EEF2K	O00418	725 aa	Known RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	ZNF749	O43361	778 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	HTATSF1	O43719	755 aa	Known RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	TSPAN2	O60636	221 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	ATP6V1G1	O75348	118 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	FRAT2	O75474	233 aa	Predicted RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	GMNN	O75496	209 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	CD1D	P15813	335 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	ATP6V1E1	P36543	226 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	SLC1A6	P48664	564 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	HNRNPF	P52597	415 aa	Known RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	RIDA	P52758	137 aa	Known RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	LIMK2	P53671	638 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	GEM	P55040	296 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	NDUFV3	P56181	108 aa	Known RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	SST	P61278	116 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	RPS27A	P62979	156 aa	Known RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	PPP1R8	Q12972	351 aa	Known RBP	3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	ITPK1	Q13572	414 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	P2RY14	Q15391	338 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	ECSCR	Q19T08	205 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	SNAI3	Q3KNW1	292 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	PRAMEF7	Q5VXH5	474 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	HIST2H2AA3	Q6FI13	130 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	RHBDD2	Q6NTF9	364 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	ZNF343	Q6P1L6	599 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	NEK5	Q6P3R8	708 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	PAQR6	Q6TCH4	344 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044		Q6ZRG5	221 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	STXBP4	Q6ZWJ1	553 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044	MCM10	Q7L590	875 aa		3.11	□□□□□ -1.91
PTCD3-209	ENST00000472044		Q8N377	158 aa		3.11	□□□□□ -1.91

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