RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 IRAK2O43187 625 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 HOXB6P17509 224 aaKnown RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 NPBWR1P48145 328 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 RHDQ02161 417 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 TMEM115Q12893 351 aaPredicted RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 C2orf15Q8WU43 125 aaKnown RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 TMCO6Q96DC7 493 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 GIMAP5Q96F15 307 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 KCNIP1Q9NZI2 227 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 RNF11Q9Y3C5 154 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 PCDHGA8Q9Y5G5 932 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CRYM-AS1A6NIL9 109 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 H7C417 338 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 TP53I11O14683 189 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CASC3O15234 703 aaKnown RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 LATO43561 262 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 OR2B3O76000 313 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CHRM1P11229 460 aaPredicted RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 PXNP49023 591 aaPredicted RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 GDF10P55107 478 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ITPRIPL2Q3MIP1 535 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CCDC58Q4VC31 144 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SLC37A3Q8NCC5 494 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 OR51G2Q8NGK0 314 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 TAMM41Q96BW9 452 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 MYRFLQ96LU7 910 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 DICER1Q9UPY3 1922 aaKnown RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 P04436 131 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 OR12D1P0DN82 309 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 PTGS2P35354 604 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ARL2P36404 184 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 TLE3Q04726 772 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SLAMF1Q13291 335 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SEC23BQ15437 767 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 DEFB134Q4QY38 66 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CLEC20AQ6ZU45 233 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ZC3HC1Q86WB0 502 aaKnown RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ASB3Q9Y575 518 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 LCHNA4D1U4 455 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 C2CD4BA6NLJ0 364 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 PRKD3O94806 890 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ASGR2P07307 311 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ANXA3P12429 323 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 OR5K1Q8NHB7 308 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 TMEM185BQ9H7F4 350 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 A0A0D9SEW6 157 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SLC7A4O43246 635 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ZNF14P17017 642 aaPredicted RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 HTR7P34969 479 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CDNFQ49AH0 187 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SWT1Q5T5J6 900 aaKnown RBP12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 FTMTQ8N4E7 242 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CNEP1R1Q8N9A8 125 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 OR9A1PQ8NGU1 263 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 OR2T27Q8NH04 317 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 OSTF1Q92882 214 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SDSLQ96GA7 329 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 POT1Q9NUX5 634 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 NLGN3Q9NZ94 848 aa12.74□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CEP290O15078 2479 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 BMP6P22004 513 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 PSMA6P60900 246 aaKnown RBP12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 RPS21P63220 83 aaKnown RBP12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 MERTKQ12866 999 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 FAM214AQ32MH5 1076 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 PLEKHO2Q8TD55 490 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 STON2Q8WXE9 905 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SEC14L1Q92503 715 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ROPN1LQ96C74 230 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 NEDD4LQ96PU5 975 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 KCNA7Q96RP8 456 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 P2RY13Q9BPV8 354 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 EFCAB11Q9BUY7 163 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 RNF39Q9H2S5 420 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 EBF2Q9HAK2 575 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CABIN1Q9Y6J0 2220 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 LCKP06239 509 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 PEPDP12955 493 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CKMT2P17540 419 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 RAB31Q13636 194 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 RFTN1Q14699 578 aaPredicted RBP12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 PTCHD3Q3KNS1 767 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 FAM180BQ6P0A1 224 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 TMEM234Q8WY98 164 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 EBF4Q9BQW3 602 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SLC22A4Q9H015 551 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 C2orf74A8MZ97 194 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 EDN3P14138 238 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 AMY2BP19961 511 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 BORAQ6PGQ7 559 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 LANCL3Q6ZV70 420 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 GPR137CQ8N3F9 429 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 ELP5Q8TE02 316 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 RDH12Q96NR8 316 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SDCBP2Q9H190 292 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 CACNA1DQ01668 2161 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 SRRM3A6NNA2 597 aaPredicted RBP12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 I3L521 148 aa12.73□□□□□ -0.37
NPHP3-ACAD11-201ENST00000471702 DUX1O43812 170 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms