RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-209	ENST00000468872	ZNF18	P17022	549 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	FHIT	P49789	147 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	GSC	P56915	257 aa	Predicted RBP	4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	BPIFB3	P59826	476 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	PPP1R8	Q12972	351 aa	Known RBP	4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	BATF2	Q8N1L9	274 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	CCNY	Q8ND76	341 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	NUP37	Q8NFH4	326 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	LIPH	Q8WWY8	451 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	PCED1B	Q96HM7	432 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	CDHR1	Q96JP9	859 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	WWP1	Q9H0M0	922 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	ABCG4	Q9H172	646 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	TECR	Q9NZ01	308 aa	Known RBP	4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	NINJ2	Q9NZG7	142 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	NDUFA13	Q9P0J0	144 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	NARF	Q9UHQ1	456 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	BAIAP2L1	Q9UHR4	511 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	DNPEP	Q9ULA0	475 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	MRPS18C	Q9Y3D5	142 aa	Known RBP	4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	ZHX2	Q9Y6X8	837 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	PEG3	Q9GZU2	1588 aa		4.27	□□□□□ -1.73
LSM5-209	ENST00000468872	GRIN2A	Q12879	1464 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	KRTAP9-6	A8MVA2	160 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	CCS	O14618	274 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	TNFSF12	O43508	249 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	LRP3	O75074	770 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	MTRF1	O75570	445 aa	Known RBP	4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	REC8	O95072	547 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	LYN	P07948	512 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	ZNF883	P0CG24	379 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	TPBGL	P0DKB5	382 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	PC	P11498	1178 aa	Known RBP	4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	FCAR	P24071	287 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	SFN	P31947	248 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	TAF6	P49848	677 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	PMP22	Q01453	160 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	HSPA14	Q0VDF9	509 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	ZNF177	Q13360	481 aa	Predicted RBP	4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	MTHFSD	Q2M296	383 aa	Known RBP	4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	KRT71	Q3SY84	523 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	RFTN2	Q52LD8	501 aa	Predicted RBP	4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	NEPRO	Q6NW34	567 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	C3P1	Q6ZMU1	363 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	MIER3	Q7Z3K6	550 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	C17orf64	Q86WR6	236 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	OR4N5	Q8IXE1	308 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	OR10G7	Q8NGN6	311 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	TMEM186	Q96B77	213 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	ATXN7L3B	Q96GX2	97 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	GPR137	Q96N19	417 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	RUNDC3B	Q96NL0	473 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	PINK1	Q9BXM7	581 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	DDX47	Q9H0S4	455 aa	Known RBP	4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	GAN	Q9H2C0	597 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	CXXC4	Q9H2H0	198 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	IL1RAP	Q9NPH3	570 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	KCNN3	Q9UGI6	736 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	ASIC3	Q9UHC3	531 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	MRTO4	Q9UKD2	239 aa	Known RBP	4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	MMP24	Q9Y5R2	645 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	CPS1	P31327	1500 aa		4.26	□□□□□ -1.73
LSM5-209	ENST00000468872	CAMSAP1	Q5T5Y3	1602 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	RNF103-CHMP3	A0A140T963	221 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	KRT87P	A6NCN2	255 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	CSDE1	O75534	798 aa	Known RBP	4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	CXCL10	P02778	98 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	RNF224	P0DH78	156 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	AOC1	P19801	751 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	ACP1	P24666	158 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	TNFRSF4	P43489	277 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	RABIF	P47224	123 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	GEM	P55040	296 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	CALCOCO2	Q13137	446 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	GCKR	Q14397	625 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	NKAIN2	Q5VXU1	208 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	LCLAT1	Q6UWP7	414 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	MFSD7	Q6UXD7	560 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	WDR88	Q6ZMY6	472 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	KRTAP7-1	Q8IUC3	87 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	HDDC3	Q8N4P3	179 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	MRPL43	Q8N983	215 aa	Known RBP	4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	AQP11	Q8NBQ7	271 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	ZNF485	Q8NCK3	441 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	OR6M1	Q8NGM8	313 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	ESAM	Q96AP7	390 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	RAB39B	Q96DA2	213 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	RAB40C	Q96S21	281 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	JPH2	Q9BR39	696 aa	Predicted RBP	4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	FUNDC2	Q9BWH2	189 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	TRPV6	Q9H1D0	765 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	SLC26A1	Q9H2B4	701 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	UBE2T	Q9NPD8	197 aa	Predicted RBP	4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	TEX10	Q9NXF1	929 aa	Predicted RBP	4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	SPAST	Q9UBP0	616 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	FAM153A	Q9UHL3	310 aa		4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	PIN4	Q9Y237	131 aa	Known RBP	4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	MRPS2	Q9Y399	296 aa	Known RBP	4.25	□□□□□ -1.73
LSM5-209	ENST00000468872	IGLV7-46	A0A075B6I9	117 aa		4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms