RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FCGR2BP31994 310 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC8A1P32418 973 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC1A4P43007 532 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 MAGEB1P43366 347 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 KIR3DL2P43630 455 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 CSNK1DP48730 415 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SERPINB9P50453 376 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF84P51523 738 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 RIPK4P57078 832 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 RPL15P61313 204 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 STX5Q13190 355 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SEMA3BQ13214 749 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 NAE1Q13564 534 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 CAPRIN1Q14444 709 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 DRAP1Q14919 205 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SF3B4Q15427 424 aaKnown RBP eCLIP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 AP5B1Q2VPB7 878 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SOWAHCQ53LP3 525 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 LBHQ53QV2 105 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 C6orf10Q5SRN2 563 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 FAM90A2PQ658T7 463 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SEL1L3Q68CR1 1132 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF470Q6ECI4 717 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 DHRS7BQ6IAN0 325 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 TTC33Q6PID6 262 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 TMEM220Q6QAJ8 160 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 B3GLCTQ6Y288 498 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF771Q7L3S4 317 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ARHGAP22Q7Z5H3 698 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PALB2Q86YC2 1186 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D10CQ8IV04 446 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF595Q8IYB9 648 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 THEM5Q8N1Q8 247 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 CEP112Q8N8E3 955 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF248Q8NDW4 579 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 OR13C9Q8NGT0 318 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ATL1Q8WXF7 558 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 OVCA2Q8WZ82 227 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 FCGR1BQ92637 280 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SLCO2A1Q92959 643 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PPP1R36Q96LQ0 422 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 NPAS1Q99742 590 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 TMEM175Q9BSA9 504 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 OPN3Q9H1Y3 402 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC40A1Q9NP59 571 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 YAE1D1Q9NRH1 226 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC6A13Q9NSD5 602 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 MS4A12Q9NXJ0 267 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 MRPL39Q9NYK5 338 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 RDH8Q9NYR8 311 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PLK2Q9NYY3 685 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SEC14L3Q9UDX4 400 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PISDQ9UG56 409 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 NAGKQ9UJ70 344 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 ERRFI1Q9UJM3 462 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 RAB21Q9UL25 225 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PSMD13Q9UNM6 376 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 GPR132Q9UNW8 380 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 PLLPQ9Y342 182 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 SLCO1B1Q9Y6L6 691 aa4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 POLR3AO14802 1390 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-210ENST00000468534 TCF20Q9UGU0 1960 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 A0A1W2PRB8 838 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 DPPA5A6NC42 116 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 IFITM10A6NMD0 228 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 WASHC1A8K0Z3 465 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 A8MXQ7 604 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 H0YIG0 161 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 H0YJX3 145 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 TRIM77I1YAP6 450 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 FOXE1O00358 373 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 EIF3HO15372 352 aaKnown RBP eCLIP4.51□□□□□ -1.698e-6■□□□□ 10.6
CCDC88A-210ENST00000468534 KCNN4O15554 427 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 GPAA1O43292 621 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 DENRO43583 198 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ATP9AO75110 1047 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 STX11O75558 287 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 UPK3AO75631 287 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 OR6A2O95222 327 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ANXA4P09525 319 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 FCGR2AP12318 317 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CEACAM1P13688 526 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 GNSP15586 552 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF44P15621 663 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 HNF1AP20823 631 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 PAICSP22234 425 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC6A6P31641 620 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CDKN2CP42773 168 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 PTPN9P43378 593 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CXCR3P49682 368 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 GNAQP50148 359 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 C21orf59P57076 290 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 UBE2G2P60604 165 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 EGR4Q05215 589 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 PMPCAQ10713 525 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 STXBP2Q15833 593 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC18A3Q16572 532 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ATP13A5Q4VNC0 1218 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 XKR7Q5GH72 579 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CXorf66Q5JRM2 361 aaPredicted RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms