RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 PDPK1O15530 556 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 VNN2O95498 520 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 C6orf47O95873 294 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 NR2F6P10588 404 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 NAT1P18440 290 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 APEX1P27695 318 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 CSNK1DP48730 415 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 WNT4P56705 351 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 SNRPD2P62316 118 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 ABATP80404 500 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 ZNF763Q0D2J5 394 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 TPBGQ13641 420 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 LEXMQ3ZCV2 418 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 C3orf38Q5JPI3 329 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 TOR2AQ5JU69 321 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 BICRALQ6AI39 1079 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 CXCL17Q6UXB2 119 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 QSOX2Q6ZRP7 698 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 NATD1Q8N6N6 113 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 DCAF4L2Q8NA75 395 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 HUS1BQ8NHY5 278 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 HDHD5Q9BXW7 423 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.8■□□□□ 0.62e-7■■■■□ 21.2
SDF4-205ENST00000465727 RHCGQ9UBD6 479 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 NLKQ9UBE8 527 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 EIF3KQ9UBQ5 218 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 RAB23Q9ULC3 237 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 ASB4Q9Y574 426 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 PCDHB7Q9Y5E2 793 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 SPIN1Q9Y657 262 aaPredicted RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 TRBV4-1A0A0J9YWV2 114 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 H3BN98 237 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 COCHO43405 550 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 ETHE1O95571 254 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 RECKO95980 971 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 DDX5P17844 614 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 CHI3L1P36222 383 aaPredicted RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 FEN1P39748 380 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 CASP9P55211 416 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 CNIH2Q6PI25 160 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 PAQR6Q6TCH4 344 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 SLC51BQ86UW2 128 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 VRK3Q8IV63 474 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 C9orf62Q8N4C0 152 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 TCEANCQ8N8B7 351 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 TMEM145Q8NBT3 493 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 OR4K1Q8NGD4 311 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 OR52I1Q8NGK6 324 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 APOBEC4Q8WW27 367 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 WRAP53Q9BUR4 548 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 POLDIP3Q9BY77 421 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 EXO1Q9UQ84 846 aaKnown RBP18.8■□□□□ 0.6
SDF4-205ENST00000465727 OR51B4Q9Y5P0 310 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 AUP1Q9Y679 476 aa18.8■□□□□ 0.6
SDF4-205ENST00000465727 PCM1Q15154 2024 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 TMEM129A0AVI4 362 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 OR5K3A6NET4 321 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 HEPACAM2A8MVW5 462 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 FFAR1O14842 300 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 GPR37L1O60883 481 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 DUSP11O75319 330 aaKnown RBP18.79■□□□□ 0.6
SDF4-205ENST00000465727 GAAP10253 952 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 AKR1A1P14550 325 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 PNLIPRP1P54315 467 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 ALDH6A1Q02252 535 aaKnown RBP18.79■□□□□ 0.6
SDF4-205ENST00000465727 DUSP4Q13115 394 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 CCL14Q16627 93 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 KLHL22Q53GT1 634 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 ATAT1Q5SQI0 421 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 DCST1Q5T197 706 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 RASGRP3Q8IV61 690 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 OR6K2Q8NGY2 324 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 OR52P1PQ8NH57 321 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 NARFLQ9H6Q4 476 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 NT5DC2Q9H857 520 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 FOLH1BQ9HBA9 442 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 TESQ9UGI8 421 aaKnown RBP18.79■□□□□ 0.6
SDF4-205ENST00000465727 SLC23A1Q9UHI7 598 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 SF3B6Q9Y3B4 125 aaKnown RBP18.79■□□□□ 0.6
SDF4-205ENST00000465727 CLCA3PQ9Y6N3 262 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 FRMPD3Q5JV73 1810 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 KIAA1671Q9BY89 1806 aa18.79■□□□□ 0.6
SDF4-205ENST00000465727 CACNB4O00305 520 aaPredicted RBP18.78■□□□□ 0.6
SDF4-205ENST00000465727 RFPL3O75679 317 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 SOX14O95416 240 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 CFL1P23528 166 aaKnown RBP18.78■□□□□ 0.6
SDF4-205ENST00000465727 ELAVL4P26378 380 aaKnown RBP18.78■□□□□ 0.6
SDF4-205ENST00000465727 GABRA5P31644 462 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 INPP1P49441 399 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 MAPK12P53778 367 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 BTG1P62324 171 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 RIPPLY1Q0D2K3 151 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 PDE7AQ13946 482 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 DUSP6Q16828 381 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 SLC5A12Q1EHB4 618 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 ATP13A5Q4VNC0 1218 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 CLLU1OSQ5K130 101 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 ZDHHC20Q5W0Z9 365 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 UNC5DQ6UXZ4 953 aa18.78■□□□□ 0.6
SDF4-205ENST00000465727 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.78■□□□□ 0.66e-7■■■■■ 34.3
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms