RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TSTD1Q8NFU3 115 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 PHF21AQ96BD5 680 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 MGLLQ99685 303 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 CLEC4AQ9UMR7 237 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 SAGE2PA6NJ88 616 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 GNB5O14775 395 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 BMP1P13497 986 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 CSTF2P33240 577 aaKnown RBP eCLIP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 CA5AP35218 305 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 COPZ1P61923 177 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TAP2Q03519 686 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 PROX2Q3B8N5 592 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 GGTA1PQ4G0N0 100 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 KHDRBS2Q5VWX1 349 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 RNF44Q7L0R7 432 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 B3GNT8Q7Z7M8 397 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 SLC30A8Q8IWU4 369 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 PEX5LQ8IYB4 626 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TTLQ8NG68 377 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 C9orf43Q8TAL5 461 aaPredicted RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 SETD7Q8WTS6 366 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TRUB1Q8WWH5 349 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 SERHL2Q9H4I8 314 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 SERHLQ9NQF3 203 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 DZANK1Q9NVP4 752 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 SOHLH2Q9NX45 425 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 A0A1W2PQU0 124 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 K7ESM1 405 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF701M0R085 212 aaPredicted RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 SLC30A4O14863 429 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 GADD45AP24522 165 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 GTF2E2P29084 291 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 CRISP1P54107 249 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 PIN1Q13526 163 aaPredicted RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 GINS1Q14691 196 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 EIF4HQ15056 248 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TCTN1Q2MV58 587 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 Q6ZNB5 142 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 AKAP14Q86UN6 197 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 GPR151Q8TDV0 419 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ZSWIM3Q96MP5 696 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF624Q9P2J8 865 aaPredicted RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 COMMD3Q9UBI1 195 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 CFL2Q9Y281 166 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 WBP11Q9Y2W2 641 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ENPP4Q9Y6X5 453 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TRBV5-4A0A0C4DH59 114 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 FAM170BA6NMN3 283 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 H0YIV9 168 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 CCNKO75909 580 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ACPPP15309 386 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 SLC13A2Q13183 592 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 NKG7Q16617 165 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 COX20Q5RI15 118 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ASTLQ6HA08 431 aaPredicted RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 SLCO4C1Q6ZQN7 724 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TAF8Q7Z7C8 310 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 NLGN4XQ8N0W4 816 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 CADM2Q8N3J6 435 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 OR51I1Q9H343 314 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TMEM165Q9HC07 324 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 CUEDC1Q9NWM3 386 aaPredicted RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ADAM30Q9UKF2 790 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 PIEZO1Q92508 2521 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ACACAQ13085 2346 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TDRD15B5MCY1 1934 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 RNASET2O00584 256 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 TSC22D2O75157 780 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 DCKP27707 260 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 PCGF2P35227 344 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 PRSS48Q7RTY5 328 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 MEX3DQ86XN8 651 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 GJD3Q8N144 294 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 OR8J2Q8NGG1 315 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 OR5D16Q8NGK9 328 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 OR13F1Q8NGS4 319 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ALG14Q96F25 216 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 PRDM8Q9NQV8 689 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ACSL5Q9ULC5 683 aa11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ASCC3Q8N3C0 2202 aaKnown RBP11.09□□□□□ -0.63
NPHP4-204ENST00000460696 ZFC3H1O60293 1989 aaKnown RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 MIA3Q5JRA6 1907 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 BRCA1P38398 1863 aaKnown RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 PCDH17O14917 1159 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 RHCEP18577 417 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 PHC1P78364 1004 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 FCHO2Q0JRZ9 810 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 STX4Q12846 297 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF776Q68DI1 518 aaPredicted RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 TMEM179BQ7Z7N9 219 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 COX18Q8N8Q8 333 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 RELTQ969Z4 430 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 CRELD1Q96HD1 420 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 MCCC1Q96RQ3 725 aaPredicted RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 RAB11FIP5Q9BXF6 653 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 NTN4Q9HB63 628 aa11.08□□□□□ -0.64
NPHP4-204ENST00000460696 RC3H2Q9HBD1 1191 aaKnown RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 CAB39Q9Y376 341 aaPredicted RBP11.08□□□□□ -0.64
NPHP4-204ENST00000460696 CCDC182A6NF36 153 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms