RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ETHE1	O95571	254 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	ATXN8OS	P0DMR3	200 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	NTS	P30990	170 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	HPCAL1	P37235	193 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	HTR6	P50406	440 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	PPP2R2A	P63151	447 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	NDUFAF5	Q5TEU4	345 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	SLC48A1	Q6P1K1	146 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	RPS27L	Q71UM5	84 aa	Known RBP	10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	ARMC10	Q8N2F6	343 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	SLC15A4	Q8N697	577 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	PRPF18	Q99633	342 aa	Known RBP	10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	MECR	Q9BV79	373 aa		10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	PNO1	Q9NRX1	252 aa	Known RBP	10.02	□□□□□ -0.81
UBR4-208	ENST00000459947	UQCRHL	A0A096LP55	91 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	PPP6C	O00743	305 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	SEC24D	O94855	1032 aa	Predicted RBP	10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	IGF2R	P11717	2491 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	CREB1	P16220	341 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	TEX19	Q8NA77	164 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	ABHD17A	Q96GS6	310 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	MANSC1	Q9H8J5	431 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	ATG4B	Q9Y4P1	393 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	B3GALT4	O96024	378 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	POR	P16435	677 aa	Predicted RBP	10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	EXD3	Q8N9H8	876 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	LRRC8C	Q8TDW0	803 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	ELP5	Q8TE02	316 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	C16orf78	Q8WTQ4	265 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	STON2	Q8WXE9	905 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	C8orf44	Q96CB5	159 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	TM4SF18	Q96CE8	201 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	DTNBP1	Q96EV8	351 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	C12orf65	Q9H3J6	166 aa	Known RBP	10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	MIEF1	Q9NQG6	463 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	FARSB	Q9NSD9	589 aa	Known RBP	10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	TAS2R7	Q9NYW3	318 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	PCDHGB6	Q9Y5F9	930 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	CEP295	Q9C0D2	2601 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947		A0A1W2PR48	441 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	CAPN14	A8MX76	684 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	SH3BGRL	O75368	114 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	CDC123	O75794	336 aa	Predicted RBP	10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	FAM87A	P0C7U9	286 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	XKR7	Q5GH72	579 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	LANCL3	Q6ZV70	420 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	CRLF3	Q8IUI8	442 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	PNPLA2	Q96AD5	504 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	ANKRD9	Q96BM1	317 aa	Predicted RBP	10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	FBXL20	Q96IG2	436 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	CSF3R	Q99062	836 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	TRIM55	Q9BYV6	548 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	ZNF552	Q9H707	407 aa	Predicted RBP	10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	HHATL	Q9HCP6	504 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	ATAD3A	Q9NVI7	634 aa		10.01	□□□□□ -0.81
UBR4-208	ENST00000459947	TRAV17	A0A0B4J275	112 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	FAM227A	F5H4B4	570 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	MAOA	P21397	527 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	BGN	P21810	368 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	RPP38	P78345	283 aa	Known RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	BTG2	P78543	158 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	NOXRED1	Q6NXP6	359 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	NFAM1	Q8NET5	270 aa	Predicted RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	FDCSP	Q8NFU4	85 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	DNAJB14	Q8TBM8	379 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	KCNA7	Q96RP8	456 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	SEMA4C	Q9C0C4	833 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	TP53TG5	Q9Y2B4	290 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	CPM	P14384	443 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	DDC	P20711	480 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	DCAF7	P61962	342 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	FOLH1	Q04609	750 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	SLC29A4	Q7RTT9	530 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	GALNT12	Q8IXK2	581 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	LRRC25	Q8N386	305 aa	Predicted RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	FAM98A	Q8NCA5	519 aa	Known RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	OR1N1	Q8NGS0	311 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	NUBPL	Q8TB37	319 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	SLC22A8	Q8TCC7	542 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	ZNF675	Q8TD23	568 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	C19orf60	Q96EN9	201 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	INTS9	Q9NV88	658 aa	Known RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	PRODH2	Q9UF12	536 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	DNAJC15	Q9Y5T4	150 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	MYO15A	Q9UKN7	3530 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	CFAP54	Q96N23	3096 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	WDR91	A4D1P6	747 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	C17orf105	B2RV13	164 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	SOX30	O94993	753 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	CHRNG	P07510	517 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	HMGCS1	Q01581	520 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	BST1	Q10588	318 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	SOWAHC	Q53LP3	525 aa	Predicted RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	TCHHL1	Q5QJ38	904 aa	Predicted RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	RPUSD3	Q6P087	351 aa	Known RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	HSDL2	Q6YN16	418 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	ZCCHC23	Q6ZST2	131 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	RPS19BP1	Q86WX3	136 aa	Known RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	HAS2	Q92819	552 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	KLHL29	Q96CT2	875 aa		10	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms