RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 OR6K6Q8NGW6 343 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 OLIG1Q8TAK6 271 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF707Q96C28 371 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 IL4I1Q96RQ9 567 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 INPP5KQ9BT40 448 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 DOHHQ9BU89 302 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 C1QTNF1Q9BXJ1 281 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 UCK2Q9BZX2 261 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 FOXQ1Q9C009 403 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 C6orf106Q9H6K1 298 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 AMBNQ9NP70 447 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 PCDHB14Q9Y5E9 798 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 RDH16O75452 317 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 RCBTB2O95199 551 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 OR5F1O95221 314 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 OLFM2O95897 454 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 RENP00797 406 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 CD27P26842 260 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 TMED10P49755 219 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 MCCD1P59942 119 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 RPS15P62841 145 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 RACK1P63244 317 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 PLCXD2Q0VAA5 305 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 IQCCQ4KMZ1 466 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF57Q68EA5 555 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 OR6C4Q8NGE1 309 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 TP53INP1Q96A56 240 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 CIDECQ96AQ7 238 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 KCNK13Q9HB14 408 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 A0A1B0GTW7 788 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 SGK494L7N484 410 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 AP1G1O43747 822 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 CSTAP01040 98 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF823P16415 610 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 FMO3P31513 532 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 OPRD1P41143 372 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ZXDBP98169 803 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 MC1RQ01726 317 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 MAPK11Q15759 364 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 SYT16Q17RD7 645 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 GTDC1Q4AE62 458 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 LCN1P1Q5VSP4 162 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF550Q7Z398 422 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 EID2Q8N6I1 236 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 OR10H4Q8NGA5 316 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 MAFAQ8NHW3 353 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 MRGPRX1Q96LB2 322 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 COPS4Q9BT78 406 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 MKRN2Q9H000 416 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 P2RY12Q9H244 342 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 EHD1Q9H4M9 534 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 PTGES2Q9H7Z7 377 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ELL3Q9HB65 397 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 C14orf105Q9NVL8 296 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 SMOXQ9NWM0 555 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 CRNNQ9UBG3 495 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 CENPXA8MT69 81 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 HCRTR2O43614 444 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 SEMA3DO95025 777 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 GLULP15104 373 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 DDCP20711 480 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 RNF144AP50876 292 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 TAP2Q03519 686 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 FCHO2Q0JRZ9 810 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 TRAM2Q15035 370 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM44Q2T9K0 475 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 PAGE3Q5JUK9 113 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 FIGNL1Q6PIW4 674 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 OR52N2Q8NGI0 321 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 NR4A3Q92570 626 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 PPP1R14AQ96A00 147 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ECHDC3Q96DC8 303 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 PDXPQ96GD0 296 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 C20orf27Q9GZN8 174 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 SHROOM3Q8TF72 1996 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 HYKKA2RU49 373 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 POLR1CO15160 346 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 KIF1CO43896 1103 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 PSIP1O75475 530 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 SOX30O94993 753 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 GPX3P22352 226 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 RBMS1P29558 406 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF41P51814 821 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 EPHA5P54756 1037 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 COX10Q12887 443 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 PTGES3Q15185 160 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM196Q5HYL7 178 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 SDR16C5Q8N3Y7 309 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 OR52P1PQ8NH57 321 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 MZB1Q8WU39 189 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 METTL2AQ96IZ6 378 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 CD180Q99467 661 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 LPAR4Q99677 370 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 FGF22Q9HCT0 170 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 HMG20AQ9NP66 347 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ZFR2Q9UPR6 939 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 HCN4Q9Y3Q4 1203 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 PLEKHM1Q9Y4G2 1056 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 H0Y8X5 98 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms