RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 GRIA2P42262 883 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF773Q6PK81 442 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 DOHHQ9BU89 302 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 G6PC3Q9BUM1 346 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 IL23AQ9NPF7 189 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 PPP4R1LQ9P1A2 415 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 ABCC6O95255 1503 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 UNC119BA6NIH7 251 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 SOX30O94993 753 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 OR4D2P58180 307 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 DEFB110Q30KQ9 67 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 FAM69BQ5VUD6 431 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 UBE2Q1Q7Z7E8 422 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 STRADBQ9C0K7 418 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 RICTORQ6R327 1708 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 IFT172Q9UG01 1749 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 ADORA3P0DMS8 318 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 JUPP14923 745 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 ATF4P18848 351 aaPredicted RBP16.46■□□□□ 0.23
PTPRF-209ENST00000438120 F8A1P23610 371 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 CST6Q15828 149 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 VMACQ2NL98 169 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 FIP1L1Q6UN15 594 aaKnown RBP16.46■□□□□ 0.23
PTPRF-209ENST00000438120 RNF111Q6ZNA4 994 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 ZUFSPQ96AP4 578 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 MOAP1Q96BY2 351 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 ASB6Q9NWX5 421 aa16.46■□□□□ 0.23
PTPRF-209ENST00000438120 FLRT2O43155 660 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 EMC8O43402 210 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 UQCRC1P31930 480 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 SIM1P81133 766 aaPredicted RBP16.46■□□□□ 0.22
PTPRF-209ENST00000438120 LRRC25Q8N386 305 aaPredicted RBP16.46■□□□□ 0.22
PTPRF-209ENST00000438120 OR52P1PQ8NH57 321 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 WDR20Q8TBZ3 569 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 ACOT12Q8WYK0 555 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 PEX11GQ96HA9 241 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 SCGB3A2Q96PL1 93 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 SLC5A7Q9GZV3 580 aa16.46■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF487B1APH4 448 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 CD97P48960 835 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 LBX1P52954 281 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 RUNX3Q13761 415 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 C6orf120Q7Z4R8 191 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ZSWIM9Q86XI8 627 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 SAMD12Q8N8I0 201 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 PIP5K1AQ99755 562 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 EXOSC1Q9Y3B2 195 aaKnown RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ALG5Q9Y673 324 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 COL14A1Q05707 1796 aaKnown RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 FAM227AF5H4B4 570 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 BPNT1O95861 308 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 H2BFMP0C1H6 154 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 IL1RNP18510 177 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 HTRA3P83110 453 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 GALK2Q01415 458 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 GRK1Q15835 563 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 SLC39A5Q6ZMH5 540 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 TREM1Q9NP99 234 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ABCD2Q9UBJ2 740 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 MEN1O00255 615 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 PTGESO14684 152 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 SLC16A5O15375 505 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 MAPK3P27361 379 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 SNU13P55769 128 aaKnown RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 CRYZQ08257 329 aaKnown RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 NXPE4Q6UWF7 544 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 CLECL1Q8IZS7 167 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 OR8J3Q8NGG0 315 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 RHEBL1Q8TAI7 183 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF689Q96CS4 500 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 C5AR2Q9P296 337 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 GLP1RP43220 463 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 RAET1LQ5VY80 246 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 RAB12Q6IQ22 244 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 SLC27A4Q6P1M0 643 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 POLE4Q9NR33 117 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ERVK-18Q9QC07 812 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ST14Q9Y5Y6 855 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 LTBP3Q9NS15 1303 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 VEGFDO43915 354 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 HNRNPA1P09651 372 aaKnown RBP eCLIP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 AK4P27144 223 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 GPR4P46093 362 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 HERV-K104P61576 105 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 LRRC37A5PQ49AS3 106 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ATG9BQ674R7 924 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 OR2T33Q8NG76 320 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 GATAD2BQ8WXI9 593 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ASB12Q8WXK4 309 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 TESCQ96BS2 214 aa16.45■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF471Q9BX82 626 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 MOV10Q9HCE1 1003 aaKnown RBP16.45■□□□□ 0.22
PTPRF-209ENST00000438120 DUX1O43812 170 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF182P17025 639 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-209ENST00000438120 S1PR1P21453 382 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 ACVR1BP36896 505 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 ATP6AP1Q15904 470 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 OR4C11Q6IEV9 310 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 KBTBD6Q86V97 674 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 GRPEL2Q8TAA5 225 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms