RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 NPIPA3F8WFD2 350 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 CCL3P10147 92 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 STT3AP46977 705 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 DNASE1L1P49184 302 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 HNRNPH2P55795 449 aaKnown RBP15.81■□□□□ 0.12
TRIM39-209ENST00000428728 PLIN5Q00G26 463 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 SLC7A5Q01650 507 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 TNFRSF17Q02223 184 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 FOLH1Q04609 750 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 ASPHQ12797 758 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 SETDB1Q15047 1291 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 PFKFB4Q16877 469 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 DEPDC1Q5TB30 811 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 C18orf63Q68DL7 685 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 PAOXQ6QHF9 649 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 MEX3BQ6ZN04 569 aaKnown RBP15.81■□□□□ 0.12
TRIM39-209ENST00000428728 FAM47EQ6ZV65 393 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 SLC22A16Q86VW1 577 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 OR5L2Q8NGL0 311 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 OR8K3Q8NH51 312 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 RGMAQ96B86 450 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 PPWD1Q96BP3 646 aaKnown RBP15.81■□□□□ 0.12
TRIM39-209ENST00000428728 FAM173AQ9BQD7 235 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 RPF2Q9H7B2 306 aaKnown RBP15.81■□□□□ 0.12
TRIM39-209ENST00000428728 SNX15Q9NRS6 342 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 SACM1LQ9NTJ5 587 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 PHF11Q9UIL8 331 aa15.81■□□□□ 0.12
TRIM39-209ENST00000428728 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.81■□□□□ 0.12
TRIM39-209ENST00000428728 CSMD2Q7Z408 3487 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 HRKO00198 91 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 P04436 131 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 C2P06681 752 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 SSTR2P30874 369 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 MAGEA5P43359 124 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 RPS13P62277 151 aaKnown RBP15.8■□□□□ 0.12
TRIM39-209ENST00000428728 ETF1P62495 437 aaKnown RBP15.8■□□□□ 0.12
TRIM39-209ENST00000428728 PHEXP78562 749 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 IGLV3-21P80748 117 aaPredicted RBP15.8■□□□□ 0.12
TRIM39-209ENST00000428728 FAM83EQ2M2I3 478 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 EMC4Q5J8M3 183 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 OPN5Q6U736 354 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 DGAT2L6Q6ZPD8 337 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 GPR180Q86V85 440 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 C9orf40Q8IXQ3 194 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 TMEM251Q8N6I4 163 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 GOLM1Q8NBJ4 401 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 OR5M9Q8NGP3 310 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 OR5M3Q8NGP4 307 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 CNPPD1Q9BV87 410 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 ZDHHC11Q9H8X9 412 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 CPSF2Q9P2I0 782 aaKnown RBP15.8■□□□□ 0.12
TRIM39-209ENST00000428728 ADGRE2Q9UHX3 823 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 ATG4BQ9Y4P1 393 aa15.8■□□□□ 0.12
TRIM39-209ENST00000428728 PDZD2O15018 2839 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 HMX2A2RU54 273 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 NKX2-6A6NCS4 301 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 DYRK3O43781 588 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 CNR1P21554 472 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 ARL1P40616 181 aaPredicted RBP15.79■□□□□ 0.12
TRIM39-209ENST00000428728 PIK3CBP42338 1070 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 PCDH1Q08174 1060 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 CPSF6Q16630 551 aaKnown RBP eCLIP15.79■□□□□ 0.12
TRIM39-209ENST00000428728 NDUFAF5Q5TEU4 345 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 TMEM211Q6ICI0 200 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 C8orf74Q6P047 294 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 KLC3Q6P597 504 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 FAM109AQ8N4B1 249 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 RHEBL1Q8TAI7 183 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 SLC22A8Q8TCC7 542 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 CHTF18Q8WVB6 975 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 RND1Q92730 232 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 SENP5Q96HI0 755 aaPredicted RBP15.79■□□□□ 0.12
TRIM39-209ENST00000428728 ART5Q96L15 291 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 GAL3ST4Q96RP7 486 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 SMC6Q96SB8 1091 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 SPOCK3Q9BQ16 436 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 PNPLA3Q9NST1 481 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 MS4A12Q9NXJ0 267 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 TUBA8Q9NY65 449 aaPredicted RBP15.79■□□□□ 0.12
TRIM39-209ENST00000428728 TNFRSF10DQ9UBN6 386 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 RNF6Q9Y252 685 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 PCDHGA11Q9Y5H2 935 aa15.79■□□□□ 0.12
TRIM39-209ENST00000428728 A0A096LPK6 155 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 GLOD5A6NK44 160 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 OR10H2O60403 315 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 EEDO75530 441 aaKnown RBP15.78■□□□□ 0.12
TRIM39-209ENST00000428728 GLSO94925 669 aaPredicted RBP15.78■□□□□ 0.12
TRIM39-209ENST00000428728 SIX3O95343 332 aaPredicted RBP15.78■□□□□ 0.12
TRIM39-209ENST00000428728 IGKV3-11P04433 115 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 CELA3AP09093 270 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 NR2F6P10588 404 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 ALOX15P16050 662 aaPredicted RBP15.78■□□□□ 0.12
TRIM39-209ENST00000428728 CHRNB4P30926 498 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 TLX1P31314 330 aaPredicted RBP15.78■□□□□ 0.12
TRIM39-209ENST00000428728 PIGAP37287 484 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 BUD31P41223 144 aaPredicted RBP15.78■□□□□ 0.12
TRIM39-209ENST00000428728 PIK3CGP48736 1102 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 SERPINB8P50452 374 aa15.78■□□□□ 0.12
TRIM39-209ENST00000428728 ALDH18A1P54886 795 aaKnown RBP15.78■□□□□ 0.12
TRIM39-209ENST00000428728 NUP107P57740 925 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms