RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 ENTPD4Q9Y227 616 aa25.05■■□□□ 1.6
LDB1-202ENST00000425280 MRPS2Q9Y399 296 aaKnown RBP25.05■■□□□ 1.6
LDB1-202ENST00000425280 SPAG17Q6Q759 2223 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 A0A1W2PS29 197 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 hCG_2039718K7EN88 272 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 C8orf89P0DMQ9 161 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 ALDH3A2P51648 485 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 KCNJ10P78508 379 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 TP53BP2Q13625 1128 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 RUNX2Q13950 521 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 DEFB133Q30KQ1 61 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 PRPF38BQ5VTL8 546 aaKnown RBP25.04■■□□□ 1.6
LDB1-202ENST00000425280 C17orf82Q86X59 251 aaPredicted RBP25.04■■□□□ 1.6
LDB1-202ENST00000425280 TAMM41Q96BW9 452 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 DOHHQ9BU89 302 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 ZSCAN32Q9NX65 697 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 VNN3Q9NY84 501 aa25.04■■□□□ 1.6
LDB1-202ENST00000425280 LMO7DNF2Z398 122 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 ZSCAN9O15535 394 aaPredicted RBP25.03■■□□□ 1.6
LDB1-202ENST00000425280 SDC3O75056 442 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 OPN1SWP03999 348 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 PCBP3P57721 371 aaKnown RBP25.03■■□□□ 1.6
LDB1-202ENST00000425280 SELENOWP63302 87 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 PPP1R8Q12972 351 aaKnown RBP25.03■■□□□ 1.6
LDB1-202ENST00000425280 CCDC116Q8IYX3 515 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 HS3ST5Q8IZT8 346 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 OR5K1Q8NHB7 308 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 FAM60AQ9NP50 221 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 ANGPT4Q9Y264 503 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 HCRTR1O43613 425 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 B3GALT2O43825 422 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 DNAJB6O75190 326 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 ALPLP05186 524 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 ALOX12P18054 663 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 CSNK2A2P19784 350 aaPredicted RBP25.03■■□□□ 1.6
LDB1-202ENST00000425280 PTGER1P34995 402 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 FEN1P39748 380 aaKnown RBP25.03■■□□□ 1.6
LDB1-202ENST00000425280 DCTP40126 519 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 MYBPC1Q00872 1141 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 TNFRSF17Q02223 184 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 MYBPC3Q14896 1274 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 SLC36A3Q495N2 470 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 KLHL35Q6PF15 583 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 SLC30A8Q8IWU4 369 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 SDCCAG3Q96C92 435 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 C10orf90Q96M02 699 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 SERHL2Q9H4I8 314 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 A4GALTQ9NPC4 353 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 PHF11Q9UIL8 331 aa25.03■■□□□ 1.6
LDB1-202ENST00000425280 LILRA5A6NI73 299 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 SNAP29O95721 258 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 ALPPL2P10696 532 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 CDH3P22223 829 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 LIM2P55344 173 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 SIM2Q14190 667 aaPredicted RBP25.02■■□□□ 1.6
LDB1-202ENST00000425280 ELOAQ14241 798 aaKnown RBP25.02■■□□□ 1.6
LDB1-202ENST00000425280 CEBPEQ15744 281 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 CRB2Q5IJ48 1285 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 MANEAQ5SRI9 462 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 OR2T5Q6IEZ7 315 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 PIWIL3Q7Z3Z3 882 aaKnown RBP25.02■■□□□ 1.6
LDB1-202ENST00000425280 ZNF655Q8N720 491 aaPredicted RBP25.02■■□□□ 1.6
LDB1-202ENST00000425280 CSNK1A1LQ8N752 337 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 OR2T29Q8NH02 315 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 TBC1D20Q96BZ9 403 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 C7orf34Q96L11 122 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 ZNF681Q96N22 645 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 IER2Q9BTL4 223 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 IL21RQ9HBE5 538 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 UCKL1Q9NWZ5 548 aa25.02■■□□□ 1.6
LDB1-202ENST00000425280 A6NHS1 94 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 M0QX08 132 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 BCAT2O15382 392 aaPredicted RBP25.01■■□□□ 1.59
LDB1-202ENST00000425280 E2F6O75461 281 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 SMNDC1O75940 238 aaKnown RBP eCLIP25.01■■□□□ 1.59
LDB1-202ENST00000425280 C9P02748 559 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 CPN2P22792 545 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 BUD31P41223 144 aaPredicted RBP25.01■■□□□ 1.59
LDB1-202ENST00000425280 C21orf59P57076 290 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 VSX2P58304 361 aaPredicted RBP25.01■■□□□ 1.59
LDB1-202ENST00000425280 COL9A2Q14055 689 aaPredicted RBP25.01■■□□□ 1.59
LDB1-202ENST00000425280 IQCCQ4KMZ1 466 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 RAB8BQ92930 207 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 SLC38A3Q99624 504 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 SEMA3GQ9NS98 782 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 TMEM74BQ9NUR3 256 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 GIMAP4Q9NUV9 329 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 U3KQV3 271 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 HMGN4O00479 90 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 DIRAS1O95057 198 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 HPRP00739 348 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 PROS1P07225 676 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 ZNF10P21506 573 aaPredicted RBP25.01■■□□□ 1.59
LDB1-202ENST00000425280 CAPZBP47756 277 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 AFF3P51826 1226 aaKnown RBP25.01■■□□□ 1.59
LDB1-202ENST00000425280 BIRC2Q13490 618 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 WDR45BQ5MNZ6 344 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 REEP3Q6NUK4 255 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 OGFOD3Q6PK18 319 aa25.01■■□□□ 1.59
LDB1-202ENST00000425280 TSSK4Q6SA08 328 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms