RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GPR139Q6DWJ6 353 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 PIM3Q86V86 326 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 UCN3Q969E3 161 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 S100PBPQ96BU1 408 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 TRIB3Q96RU7 358 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 TUBA1CQ9BQE3 449 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF649Q9BS31 505 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 EIF5A2Q9GZV4 153 aaKnown RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 TMEM98Q9Y2Y6 226 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 UBR2Q8IWV8 1755 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 LOC100130705A0A1B0GUX0 176 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 AGAP5A6NIR3 686 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 GSRP00390 522 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ASGR2P07307 311 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 C8BP07358 591 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 EBLN1P0CF75 366 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 IFI30P13284 250 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 PORP16435 677 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 DRD1P21728 446 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ASPAP45381 313 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 MFSD13AQ14CX5 517 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 IRF2BP2Q7Z5L9 587 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 TICAM1Q8IUC6 712 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ERI1Q8IV48 349 aaKnown RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 DCAF4L2Q8NA75 395 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SLC35F5Q8WV83 523 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SORCS1Q8WY21 1168 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 NANSQ9NR45 359 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 FAM118AQ9NWS6 357 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 PIP5K1CO60331 668 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ECI2O75521 394 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 FAM155BO75949 473 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 YES1P07947 543 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 GTF2F2P13984 249 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SLAMF1Q13291 335 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 HSD17B12Q53GQ0 312 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SPATC1Q76KD6 591 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 PXKQ7Z7A4 578 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 NPAS3Q8IXF0 933 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 TCEANCQ8N8B7 351 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SCAMP5Q8TAC9 235 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF461Q8TAF7 563 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 DIO2Q92813 273 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 MUCL1Q96DR8 90 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 CD244Q9BZW8 370 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 C1orf21Q9H246 121 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SRA1Q9HD15 236 aaKnown RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 RGPD1P0DJD0 1748 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 MIA3Q5JRA6 1907 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 LRRC10BA6NIK2 292 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 LILRB5O75023 590 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 NIPSNAP2O75323 286 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 CLDN7O95471 211 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 CST3P01034 146 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 HLA-DQB2P05538 268 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 MMP2P08253 660 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 RRADP55042 308 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 FXYD6P3P58550 94 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SLC35F1Q5T1Q4 408 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 UNC5DQ6UXZ4 953 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 CLNKQ7Z7G1 428 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SNX29P2Q8IUI4 249 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SLC5A8Q8N695 610 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF366Q8N895 744 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 NETO2Q8NC67 525 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 HCAR1Q9BXC0 346 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ITPAQ9BY32 194 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 POTEKPQ9BYX7 375 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ST6GALNAC4Q9H4F1 302 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SLC6A14Q9UN76 642 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 CACNA1SQ13698 1873 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SLC16A5O15375 505 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SCO2O43819 266 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 AOC2O75106 756 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ZNF821O75541 412 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 CNOT4O95628 575 aaKnown RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 LMO2P25791 158 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 AKR1C2P52895 323 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ADAM17P78536 824 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SERTAD2Q14140 314 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 RBM39Q14498 530 aaKnown RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 PCBP2Q15366 365 aaKnown RBP eCLIP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 XKRXQ6PP77 449 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 METTL27Q8N6F8 245 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 CSNK1A1LQ8N752 337 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 NUP43Q8NFH3 380 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 SUN5Q8TC36 379 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 PRR11Q96HE9 360 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-204ENST00000423058 DERL2Q9GZP9 239 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 HIF1ANQ9NWT6 349 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 KCNK6Q9Y257 313 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 ATRNL1Q5VV63 1379 aa6.59□□□□□ -1.35
SCN1A-204ENST00000423058 A0A1W2PPM1 405 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 PCP4L1A6NKN8 68 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 PDLIM1O00151 329 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 RNGTTO60942 597 aaKnown RBP6.59□□□□□ -1.36
SCN1A-204ENST00000423058 CLN5O75503 358 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 RBBP9O75884 186 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 KCNK5O95279 499 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 ICAM2P13598 275 aa6.59□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms