RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CORO1CQ9ULV4 474 aaPredicted RBP7.46□□□□□ -1.22
VIM-202ENST00000421459 CBLCQ9ULV8 474 aa7.46□□□□□ -1.22
VIM-202ENST00000421459 RPH3AQ9Y2J0 694 aaPredicted RBP7.46□□□□□ -1.22
VIM-202ENST00000421459 PRRC2AP48634 2157 aaKnown RBP7.46□□□□□ -1.22
VIM-202ENST00000421459 A0A088AWK7 358 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 A0A1W2PS29 197 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 FAM221AA4D161 298 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 GLOD5A6NK44 160 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 A6NNC1 897 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 SYT5O00445 386 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 CCNT2O60583 730 aaKnown RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 WDR1O75083 606 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 STK16O75716 305 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 ACSL3O95573 720 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 IGKV3-11P04433 115 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 CCDC166P0CW27 439 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 PCNAP12004 261 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 ZNF10P21506 573 aaPredicted RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 CPN2P22792 545 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 DGKQP52824 942 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 PPP2R2AP63151 447 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 KCNJ2P63252 427 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 PDIA2Q13087 525 aaKnown RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 CHIT1Q13231 466 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 SLAMF1Q13291 335 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 EFTUD2Q15029 972 aaKnown RBP eCLIP7.45□□□□□ -1.226e-12■■■■■ 89.3
VIM-202ENST00000421459 SLC25A35Q3KQZ1 300 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 RIPPLY2Q5TAB7 128 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 SLC22A10Q63ZE4 541 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 POMZP3Q6PJE2 187 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 OPN5Q6U736 354 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 PLXDC2Q6UX71 529 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 ADAMTSL2Q86TH1 951 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 GPSM1Q86YR5 675 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 PDIK1LQ8N165 341 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 FAM13CQ8NE31 585 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 WFDC11Q8NEX6 87 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 OR5L2Q8NGL0 311 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 OR8K3Q8NH51 312 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 PAQR8Q8TEZ7 354 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 ZNF473Q8WTR7 871 aaKnown RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 SARAFQ96BY9 339 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 PTCD3Q96EY7 689 aaKnown RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 RMND5BQ96G75 393 aaPredicted RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 SGCZQ96LD1 299 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 GAL3ST4Q96RP7 486 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 NAP1L3Q99457 506 aaPredicted RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 SH3GL2Q99962 352 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 MS4A8Q9BY19 250 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 ZNF703Q9H7S9 590 aaPredicted RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 LYRM4Q9HD34 91 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 ZFP64Q9NPA5 681 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 MOCS1Q9NZB8 636 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 CD274Q9NZQ7 290 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 CNOT11Q9UKZ1 510 aaKnown RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 SNX12Q9UMY4 172 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 SLC6A5Q9Y345 797 aa7.45□□□□□ -1.22
VIM-202ENST00000421459 CHCHD2Q9Y6H1 151 aaPredicted RBP7.45□□□□□ -1.22
VIM-202ENST00000421459 ANK3Q12955 4377 aaKnown RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 C15orf38-AP3S2A0A0A6YYH1 394 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 GOLGA6L10A0A0M3HER8 536 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 HCN1O60741 890 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 FAM155BO75949 473 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 CLPSP04118 112 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 CD1DP15813 335 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 HIST1H1TP22492 207 aaPredicted RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 DNASE1P24855 282 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 TACR1P25103 407 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 GGT5P36269 586 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 SSR2P43308 183 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 STT3AP46977 705 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 ZNF136P52737 540 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 HNRNPH2P55795 449 aaKnown RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 ARL4CP56559 192 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 HERVK_113P63132 956 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 ERVK-8P63133 956 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 IGLV3-21P80748 117 aaPredicted RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 IRF8Q02556 426 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 DLG1Q12959 904 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 DUSP8Q13202 625 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 DDX39BQ13838 428 aaKnown RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 SERTAD2Q14140 314 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 ZNF267Q14586 743 aaPredicted RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 MORF4L2Q15014 288 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 POU4F3Q15319 338 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 PDK4Q16654 411 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 MPEG1Q2M385 716 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 DCST1Q5T197 706 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 DESI1Q6ICB0 168 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 LRRC25Q8N386 305 aaPredicted RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 VWA5B2Q8N398 1253 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 CHDHQ8NE62 594 aaPredicted RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 MYRIPQ8NFW9 859 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 GOT1L1Q8NHS2 421 aaPredicted RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 NEIL3Q8TAT5 605 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 ANKRD7Q92527 254 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 NINJ1Q92982 152 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 SPACA9Q96E40 222 aaPredicted RBP7.44□□□□□ -1.22
VIM-202ENST00000421459 WDR34Q96EX3 536 aa7.44□□□□□ -1.22
VIM-202ENST00000421459 VPS39Q96JC1 886 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms