RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 GPALPP1Q8IXQ4 340 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 LAS2Q8IYD9 372 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 SPATA4Q8NEY3 305 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 LILRB4Q8NHJ6 448 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 NRGNQ92686 78 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 C14orf79Q96F83 325 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 SENP5Q96HI0 755 aaPredicted RBP10.69□□□□□ -0.7
USP4-204ENST00000416417 DGAT2Q96PD7 388 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 MCCC2Q9HCC0 563 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 ALKBH4Q9NXW9 302 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 NUDT4Q9NZJ9 180 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 OPTCQ9UBM4 332 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 ATG4BQ9Y4P1 393 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 FAM215AQ9Y5M1 114 aa10.69□□□□□ -0.7
USP4-204ENST00000416417 A0A1W2PS29 197 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 K7EPI3 171 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 PLPP1O14494 284 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 EIF3HO15372 352 aaKnown RBP eCLIP10.68□□□□□ -0.7
USP4-204ENST00000416417 EEDO75530 441 aaKnown RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 NADKO95544 446 aaPredicted RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 P04436 131 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 LTA4HP09960 611 aaKnown RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 RFPL3SP0C7P2 107 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 HPDP32754 393 aaPredicted RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 CASP2P42575 452 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 MAGEA4P43358 317 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 RAP1GDS1P52306 607 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 RPS13P62277 151 aaKnown RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 FOXO1Q12778 655 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 TMEM35AQ53FP2 167 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 PIGGQ5H8A4 983 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 DEPDC1Q5TB30 811 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 RTL6Q6ICC9 239 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 PAOXQ6QHF9 649 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ADGRD1Q6QNK2 874 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ZDHHC24Q6UX98 284 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 TMEM64Q6YI46 380 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 GK5Q6ZS86 529 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 CHSY3Q70JA7 882 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 TRILQ7L0X0 811 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 TBC1D1Q86TI0 1168 aaPredicted RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 LIX1LQ8IVB5 337 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 HUS1BQ8NHY5 278 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 STAG3L4Q8TBR4 150 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 FBXO25Q8TCJ0 367 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ASB5Q8WWX0 329 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 CMTM7Q96FZ5 175 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 GAL3ST4Q96RP7 486 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 TREX2Q9BQ50 279 aaPredicted RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 ROGDIQ9GZN7 287 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 EXO5Q9H790 373 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 RPF2Q9H7B2 306 aaKnown RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 IL1RL2Q9HB29 575 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 KCNJ16Q9NPI9 418 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 SACM1LQ9NTJ5 587 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 COPS7AQ9UBW8 275 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 TMPRSS11DO60235 418 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 KERAO60938 352 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 SCELO95171 688 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 GBAP04062 536 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 GLI4P10075 376 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 MTHFD2P13995 350 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 IGFBP2P18065 325 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ENDOUP21128 410 aaKnown RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 ACVR2AP27037 513 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ADH7P40394 386 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 STT3AP46977 705 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 TRPC1P48995 793 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 NEK2P51955 445 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 HERVK_113P63132 956 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ERVK-8P63133 956 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 E2F2Q14209 437 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ZNF267Q14586 743 aaPredicted RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 PFKFB4Q16877 469 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ZNF791Q3KP31 576 aaPredicted RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 MROH9Q5TGP6 573 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 GRHL2Q6ISB3 625 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 OPN5Q6U736 354 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 LYPD8Q6UX82 237 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 GPR180Q86V85 440 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 CENPLQ8N0S6 344 aaPredicted RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 FAM109AQ8N4B1 249 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 SRFBP1Q8NEF9 429 aaKnown RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 OR5L2Q8NGL0 311 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 UBTD2Q8WUN7 234 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 JSRP1Q96MG2 331 aaPredicted RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 TTYH2Q9BSA4 534 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ERVK-6Q9BXR3 956 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 LDAHQ9H6V9 325 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 NMRAL1Q9HBL8 299 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 DMRT3Q9NQL9 472 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 SPRR3Q9UBC9 169 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ACAD8Q9UKU7 415 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ERVK-19Q9WJR5 959 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 ANGPTL3Q9Y5C1 460 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.68□□□□□ -0.7
USP4-204ENST00000416417 SPACA6W5XKT8 324 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 EML6Q6ZMW3 1958 aa10.68□□□□□ -0.7
USP4-204ENST00000416417 A0A0G2JNJ9 132 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 ESYT3A0FGR9 886 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms