RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 SGO1Q5FBB7 561 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 C1QL3Q5VWW1 255 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 GFRALQ6UXV0 394 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 SIAH3Q8IW03 269 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 CPSF7Q8N684 471 aaKnown RBP17.71■□□□□ 0.43
SF3A1-202ENST00000411423 EIF1ADQ8N9N8 165 aaKnown RBP17.71■□□□□ 0.43
SF3A1-202ENST00000411423 MORN4Q8NDC4 146 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 OR14A16Q8NHC5 309 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 C5orf34Q96MH7 638 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 HBEGFQ99075 208 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 ERVK-6Q9BXR3 956 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 MRPL1Q9BYD6 325 aaKnown RBP17.71■□□□□ 0.43
SF3A1-202ENST00000411423 OR8D2Q9GZM6 311 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 TEX10Q9NXF1 929 aaPredicted RBP17.71■□□□□ 0.43
SF3A1-202ENST00000411423 PLEKHB1Q9UF11 243 aaPredicted RBP17.71■□□□□ 0.43
SF3A1-202ENST00000411423 ICE1Q9Y2F5 2266 aa17.71■□□□□ 0.43
SF3A1-202ENST00000411423 WWP2O00308 870 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 FCHO1O14526 889 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 PGRMC2O15173 223 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 OR2J2O76002 312 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 PDYNP01213 254 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 TNNI3P19429 210 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 TNFRSF8P28908 595 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 SLCO1A2P46721 670 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 HK2P52789 917 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 CLCQ05315 142 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 TMEM178AQ8NBL3 297 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 DAZLQ92904 295 aaKnown RBP17.7■□□□□ 0.42
SF3A1-202ENST00000411423 SERPINI1Q99574 410 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 CENPKQ9BS16 269 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 C12orf65Q9H3J6 166 aaKnown RBP17.7■□□□□ 0.42
SF3A1-202ENST00000411423 MS4A12Q9NXJ0 267 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 MYOTQ9UBF9 498 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 SEC14L3Q9UDX4 400 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 PHF11Q9UIL8 331 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 SPACA6W5XKT8 324 aa17.7■□□□□ 0.42
SF3A1-202ENST00000411423 OR6B1O95007 311 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 SEMA3DO95025 777 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 CLPSP04118 112 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 IGKV3-11P04433 115 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 NR0B1P51843 470 aaKnown RBP17.69■□□□□ 0.42
SF3A1-202ENST00000411423 RNF4P78317 190 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 GALNT1Q10472 559 aaPredicted RBP17.69■□□□□ 0.42
SF3A1-202ENST00000411423 TTC19Q6DKK2 380 aaPredicted RBP17.69■□□□□ 0.42
SF3A1-202ENST00000411423 HSDL2Q6YN16 418 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 NUDT13Q86X67 352 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 C9orf40Q8IXQ3 194 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 MMP21Q8N119 569 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 METTL4Q8N3J2 472 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 ACMSDQ8TDX5 336 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 EPS8L3Q8TE67 593 aaKnown RBP17.69■□□□□ 0.42
SF3A1-202ENST00000411423 UBLCP1Q8WVY7 318 aaPredicted RBP17.69■□□□□ 0.42
SF3A1-202ENST00000411423 TANKQ92844 425 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 DGAT2Q96PD7 388 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 RASL10BQ96S79 203 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 DEPPQ9NTK1 212 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 LYARQ9NX58 379 aaKnown RBP17.69■□□□□ 0.42
SF3A1-202ENST00000411423 TRPS1Q9UHF7 1281 aa17.69■□□□□ 0.42
SF3A1-202ENST00000411423 PINLYPA6NC86 204 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 NPIPA5E9PKD4 350 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 G3V2L1 256 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 CDK2AP1O14519 115 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 SUPT7LO94864 414 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 OTCP00480 354 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 KLK1P06870 262 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 NR2F6P10588 404 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 CHN1P15882 459 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 ALOX15P16050 662 aaPredicted RBP17.68■□□□□ 0.42
SF3A1-202ENST00000411423 ATP5F1P24539 256 aaPredicted RBP17.68■□□□□ 0.42
SF3A1-202ENST00000411423 COL8A1P27658 744 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 RFC3P40938 356 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 SOX3P41225 446 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 HTR6P50406 440 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 SSR4P51571 173 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 ALDH6A1Q02252 535 aaKnown RBP17.68■□□□□ 0.42
SF3A1-202ENST00000411423 TBL3Q12788 808 aaKnown RBP17.68■□□□□ 0.42
SF3A1-202ENST00000411423 IFT88Q13099 833 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 CYP20A1Q6UW02 462 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 FJX1Q86VR8 437 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 SULF2Q8IWU5 870 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 CHERPQ8IWX8 916 aaKnown RBP17.68■□□□□ 0.42
SF3A1-202ENST00000411423 CYP4Z2PQ8N1L4 340 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 HORMAD2Q8N7B1 307 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 SENP5Q96HI0 755 aaPredicted RBP17.68■□□□□ 0.42
SF3A1-202ENST00000411423 GPR137Q96N19 417 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 CCDC77Q9BR77 488 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 NPIPA1Q9UND3 350 aa17.68■□□□□ 0.42
SF3A1-202ENST00000411423 YARS2Q9Y2Z4 477 aaKnown RBP17.68■□□□□ 0.42
SF3A1-202ENST00000411423 A0A0G2JMM0 328 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 A0A1W2PPB8 328 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 A0A1W2PRS3 328 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 SYNDIG1LA6NDD5 238 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 SMIM23A6NLE4 172 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 KIR3DP1A8MWS1 328 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 GPR75O95800 540 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 TAC1P20366 129 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 IMPDH1P20839 514 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 BUD31P41223 144 aaPredicted RBP17.67■□□□□ 0.42
SF3A1-202ENST00000411423 MEOX1P50221 254 aa17.67■□□□□ 0.42
SF3A1-202ENST00000411423 PRKAA2P54646 552 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms