RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PEX11GQ96HA9 241 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 FXYD6Q9H0Q3 95 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 SPAG4Q9NPE6 437 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 NUDT15Q9NV35 164 aa7□□□□□ -1.29
SCN9A-202ENST00000409435 PRPF19Q9UMS4 504 aaKnown RBP7□□□□□ -1.29
SCN9A-202ENST00000409435 ATP6AP2A0A1C7CYW4 349 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 H0Y8X5 98 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 SLC30A4O14863 429 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 AIREO43918 545 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ATP6AP2O75787 350 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 AHSA1O95433 338 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 TNFSF4P23510 183 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 CHRNB4P30926 498 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 LCN1P31025 176 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 SLC5A2P31639 672 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 MAN2A2P49641 1150 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 CDH11P55287 796 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 DLX2Q07687 328 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ADGRE1Q14246 886 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 OPN5Q6U736 354 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 AMIGO2Q86SJ2 522 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 PARP8Q8N3A8 854 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 FBXO30Q8TB52 745 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 TWNKQ96RR1 684 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ZFYVE21Q9BQ24 234 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 PPT2Q9UMR5 302 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 MYH1P12882 1939 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 TSPAN12O95859 305 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 CRYBA1P05813 215 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 HOXD8P13378 290 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 MTHFD2P13995 350 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 BMP7P18075 431 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 HNF1AP20823 631 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 VAMP1P23763 118 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 UGT2B15P54855 530 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 RPL38P63173 70 aaKnown RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 SLC14A1Q13336 389 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 GXYLT1Q4G148 440 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 VWA5B1Q5TIE3 1220 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 RAD9BQ6WBX8 426 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 CLEC17AQ6ZS10 378 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 PQLC1Q8N2U9 271 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 METTL25Q8N6Q8 603 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 RCBTB1Q8NDN9 531 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 SLC5A11Q8WWX8 675 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 CREB3L1Q96BA8 519 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ECHDC3Q96DC8 303 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 PGM2Q96G03 612 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 APOLD1Q96LR9 279 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ANKRA2Q9H9E1 313 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 PTBP2Q9UKA9 531 aaKnown RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ATXN7L1Q9ULK2 861 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF490Q9ULM2 529 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 STYXL1Q9Y6J8 313 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 NAV1Q8NEY1 1877 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 SPEF2Q9C093 1822 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 hCG_1818297A0A087WSY0 165 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF860A6NHJ4 632 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ELOA3DA6NLF2 546 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 NUAK1O60285 661 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 KCNK5O95279 499 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 VNN2O95498 520 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ANGPTL1O95841 491 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ANXA4P09525 319 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 C8orf89P0DMQ9 161 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 POU3F2P20265 443 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 TRA2AQ13595 282 aaKnown RBP eCLIP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ELOA3BQ3SY89 546 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ARL9Q6T311 187 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 METTL4Q8N3J2 472 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 LNX2Q8N448 690 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF283Q8N7M2 679 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ELOA3Q8NG57 546 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 CPT1CQ8TCG5 803 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 KIAA1191Q96A73 305 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF578Q96N58 590 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 RNF32Q9H0A6 362 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 TRIM36Q9NQ86 728 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 TMEM45AQ9NWC5 275 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 CDH22Q9UJ99 828 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF705EA8MWA4 302 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 J3QR89 54 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 GYPCP04921 128 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 AGTR2P50052 363 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 TAS2R41P59536 307 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 HSPB3Q12988 150 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 SIRPB2Q5JXA9 342 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 SLC25A25Q6KCM7 469 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 FSTL4Q6MZW2 842 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 SLC16A9Q7RTY1 509 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 GPRIN1Q7Z2K8 1008 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 MCATQ8IVS2 390 aaKnown RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 MYRFLQ96LU7 910 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 FCRL5Q96RD9 977 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 EPYCQ99645 322 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 MGME1Q9BQP7 344 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 KAT8Q9H7Z6 458 aaKnown RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 CKLFQ9UBR5 152 aa6.99□□□□□ -1.29
SCN9A-202ENST00000409435 ZNF223Q9UK11 482 aaPredicted RBP6.99□□□□□ -1.29
SCN9A-202ENST00000409435 RAB21Q9UL25 225 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms