RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 PDAP1Q13442 181 aaKnown RBP15.3■□□□□ 0.04
CHMP3-203ENST00000409225 RCN2Q14257 317 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 SLBPQ14493 270 aaKnown RBP eCLIP15.3■□□□□ 0.04
CHMP3-203ENST00000409225 EFTUD2Q15029 972 aaKnown RBP eCLIP15.3■□□□□ 0.04
CHMP3-203ENST00000409225 LYPD8Q6UX82 237 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 C9orf40Q8IXQ3 194 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 PM20D2Q8IYS1 436 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 TXLNBQ8N3L3 684 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 C2CD4AQ8NCU7 369 aaPredicted RBP15.3■□□□□ 0.04
CHMP3-203ENST00000409225 OR10G3Q8NGC4 313 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 SMPDL3BQ92485 455 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 PIGTQ969N2 578 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 PERPQ96FX8 193 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 SERINC2Q96SA4 455 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 PIP5K1AQ99755 562 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 DOHHQ9BU89 302 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 REXO4Q9GZR2 422 aaKnown RBP15.3■□□□□ 0.04
CHMP3-203ENST00000409225 PRDM14Q9GZV8 571 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 COPS7BQ9H9Q2 264 aaPredicted RBP15.3■□□□□ 0.04
CHMP3-203ENST00000409225 IKZF3Q9UKT9 509 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 DAPP1Q9UN19 280 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 CHCHD2Q9Y6H1 151 aaPredicted RBP15.3■□□□□ 0.04
CHMP3-203ENST00000409225 ANK3Q12955 4377 aaKnown RBP15.3■□□□□ 0.04
CHMP3-203ENST00000409225 ZANQ9Y493 2812 aa15.3■□□□□ 0.04
CHMP3-203ENST00000409225 CASKO14936 926 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 H2AFYO75367 372 aaKnown RBP15.29■□□□□ 0.04
CHMP3-203ENST00000409225 ENO2P09104 434 aaPredicted RBP15.29■□□□□ 0.04
CHMP3-203ENST00000409225 MLNP12872 115 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 GABRB3P28472 473 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 CPA2P48052 419 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 MTTPP55157 894 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 CBLBQ13191 982 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 SERTAD2Q14140 314 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 SF3B4Q15427 424 aaKnown RBP eCLIP15.29■□□□□ 0.04
CHMP3-203ENST00000409225 TRIM40Q6P9F5 258 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 PRSS57Q6UWY2 283 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 LUZP2Q86TE4 346 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 AGGF1Q8N302 714 aaeCLIP15.29■□□□□ 0.048e-6■□□□□ 11.2
CHMP3-203ENST00000409225 TTLQ8NG68 377 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 OR2L5Q8NG80 312 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 GABPB2Q8TAK5 448 aaPredicted RBP15.29■□□□□ 0.04
CHMP3-203ENST00000409225 NUBPLQ8TB37 319 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 ISL2Q96A47 359 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 SERPINB12Q96P63 405 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 XAB2Q9HCS7 855 aaKnown RBP15.29■□□□□ 0.04
CHMP3-203ENST00000409225 GALNT8Q9NY28 637 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 CNIH4Q9P003 139 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 SLC6A5Q9Y345 797 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 FREM3P0C091 2139 aa15.29■□□□□ 0.04
CHMP3-203ENST00000409225 NINQ8N4C6 2090 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.28■□□□□ 0.04
CHMP3-203ENST00000409225 MBD3L4A6NDZ8 208 aaPredicted RBP15.28■□□□□ 0.04
CHMP3-203ENST00000409225 MBD3L3A6NE82 208 aaPredicted RBP15.28■□□□□ 0.04
CHMP3-203ENST00000409225 MBD3L5A6NJ08 208 aaPredicted RBP15.28■□□□□ 0.04
CHMP3-203ENST00000409225 CD8B2A6NJW9 211 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 ERN1O75460 977 aaKnown RBP15.28■□□□□ 0.04
CHMP3-203ENST00000409225 TMIGD3P0DMS9 266 aaPredicted RBP15.28■□□□□ 0.04
CHMP3-203ENST00000409225 C1GALT1C1LP0DN25 315 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 MSH2P43246 934 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 ABHD17CQ6PCB6 329 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 SBSNQ6UWP8 590 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 TMIGD1Q6UXZ0 262 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 C9orf106Q8NAJ2 232 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 MBD3L2Q8NHZ7 208 aaPredicted RBP15.28■□□□□ 0.04
CHMP3-203ENST00000409225 ZNF597Q96LX8 424 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 CCL19Q99731 98 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 CNOT11Q9UKZ1 510 aaKnown RBP15.28■□□□□ 0.04
CHMP3-203ENST00000409225 ZKSCAN5Q9Y2L8 839 aa15.28■□□□□ 0.04
CHMP3-203ENST00000409225 TRIM3O75382 744 aaPredicted RBP15.27■□□□□ 0.04
CHMP3-203ENST00000409225 CLEC3AO75596 197 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 ACSL3O95573 720 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 TBX6O95947 436 aaPredicted RBP15.27■□□□□ 0.04
CHMP3-203ENST00000409225 IL18BPO95998 194 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 FGGP02679 453 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 C1QAP02745 245 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 COX7A2P14406 83 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 BMP7P18075 431 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 DCST1Q5T197 706 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 SLCO4C1Q6ZQN7 724 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 SYDE1Q6ZW31 735 aaPredicted RBP15.27■□□□□ 0.04
CHMP3-203ENST00000409225 VN1R5Q7Z5H4 357 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 SLC15A4Q8N697 577 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 DOK4Q8TEW6 326 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 SENP5Q96HI0 755 aaPredicted RBP15.27■□□□□ 0.04
CHMP3-203ENST00000409225 GAL3ST4Q96RP7 486 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 BAG1Q99933 345 aaPredicted RBP15.27■□□□□ 0.04
CHMP3-203ENST00000409225 EGFL8Q99944 293 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 MAPKAP1Q9BPZ7 522 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 UBTD1Q9HAC8 227 aa15.27■□□□□ 0.04
CHMP3-203ENST00000409225 C6orf203Q9P0P8 240 aaPredicted RBP15.27■□□□□ 0.04
CHMP3-203ENST00000409225 DOCK7Q96N67 2140 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 ANKDD1BA6NHY2 528 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 RNF212BA8MTL3 300 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 HRKO00198 91 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 WDR47O94967 919 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 KRT14P02533 472 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 AHSGP02765 367 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 CCDC175P0C221 793 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 FBXO45P0C2W1 286 aa15.26■□□□□ 0.03
CHMP3-203ENST00000409225 GNAZP19086 355 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms