RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 ACER3Q9NUN7 267 aa9.43□□□□□ -0.9
PTCHD4-202ENST00000398738 ZNF224Q9NZL3 707 aa9.43□□□□□ -0.9
PTCHD4-202ENST00000398738 ITM2BQ9Y287 266 aa9.43□□□□□ -0.9
PTCHD4-202ENST00000398738 MYO10Q9HD67 2058 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 HOXB9P17482 250 aaPredicted RBP9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 RPL17P18621 184 aaKnown RBP9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 ALAS2P22557 587 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 SSTR2P30874 369 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 RPS5P46782 204 aaKnown RBP9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 CERS6Q6ZMG9 384 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 TRIM69Q86WT6 500 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 NPAS3Q8IXF0 933 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 PHC2Q8IXK0 858 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 C9orf43Q8TAL5 461 aaPredicted RBP9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 CSGALNACT1Q8TDX6 532 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 ZBED6CLQ96FA7 236 aaPredicted RBP9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 ART5Q96L15 291 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 CNTNAP3BQ96NU0 1288 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 QRFPRQ96P65 431 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 DHRS9Q9BPW9 319 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 CNTNAP3Q9BZ76 1288 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 SGK2Q9HBY8 427 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 ATP13A2Q9NQ11 1180 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 C12orf4Q9NQ89 552 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 FKBP14Q9NWM8 211 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 STUB1Q9UNE7 303 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 TRAPPC4Q9Y296 219 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 GPR52Q9Y2T5 361 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 OR2AG2A6NM03 316 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 E7EQ34 232 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 ZNF670-ZNF695F2Z2N8 137 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 F11P03951 625 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 UBL4AP11441 157 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 AOAHP28039 575 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 HNF1BP35680 557 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 ATP5C1P36542 298 aaKnown RBP9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 CPT1AP50416 773 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 RPS25P62851 125 aaKnown RBP9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 MEF2AQ02078 507 aaPredicted RBP9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 ZNF91Q05481 1191 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 DOC2AQ14183 400 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 CREB3L4Q8TEY5 395 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 RAB8BQ92930 207 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 UPRTQ96BW1 309 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 TBC1D20Q96BZ9 403 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 TMEM80Q96HE8 168 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 GDF15Q99988 308 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 TMED9Q9BVK6 235 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 DNAJC11Q9NVH1 559 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 SEC14L4Q9UDX3 406 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 XIRP2A4UGR9 3374 aa9.42□□□□□ -0.9
PTCHD4-202ENST00000398738 LEUTXA8MZ59 168 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 FABP7O15540 132 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 TSPAN9O75954 239 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 PDE9AO76083 593 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 TOXO94900 526 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 CD22P20273 847 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 CSTF2P33240 577 aaKnown RBP eCLIP9.41□□□□□ -0.91e-6■■■■□ 19.4
PTCHD4-202ENST00000398738 PTGS2P35354 604 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 GSTM5P46439 218 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 CSNK1DP48730 415 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 CDK6Q00534 326 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 TARDBPQ13148 414 aaKnown RBP eCLIP9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 VEZF1Q14119 521 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 ZNF385BQ569K4 471 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 GCNT6Q5T4J0 391 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 XKRXQ6PP77 449 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 CCDC149Q6ZUS6 474 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 KRT74Q7RTS7 529 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 C16orf62Q7Z3J2 963 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 LHFPL3Q86UP9 236 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 MMP21Q8N119 569 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 GPC2Q8N158 579 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 C2orf73Q8N5S3 287 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 FAM46DQ8NEK8 389 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 POF1BQ8WVV4 589 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 ABHD17AQ96GS6 310 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 CDCA4Q9BXL8 241 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 C12orf49Q9H741 205 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 GPATCH2Q9NW75 528 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 PADI2Q9Y2J8 665 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 C2orf92A0A1B0GVN3 265 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 GAPDHSO14556 408 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 POLR1CO15160 346 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 TBL1XO60907 577 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 TGFB1P01137 390 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 ACRV1P26436 265 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 PBLDP30039 288 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 CCT3P49368 545 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 SMSP52788 366 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 CDH4P55283 916 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 ASAH1Q13510 395 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 SLC5A12Q1EHB4 618 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 RDH10Q8IZV5 341 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 GPR26Q8NDV2 337 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 FATE1Q969F0 183 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 ANKRA2Q9H9E1 313 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 NEUROD4Q9HD90 331 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 KCNN3Q9UGI6 736 aa9.41□□□□□ -0.9
PTCHD4-202ENST00000398738 PIKFYVEQ9Y2I7 2098 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms