RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 OR5T3Q8NGG3 340 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 PMM1Q92871 262 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ATP6V1E2Q96A05 226 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 MMABQ96EY8 250 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 VPS50Q96JG6 964 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FRMD6Q96NE9 622 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 IFT80Q9P2H3 777 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 SLC12A4Q9UP95 1085 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ZFHX4Q86UP3 3567 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 CABIN1Q9Y6J0 2220 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 KIAA1549Q9HCM3 1950 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 TCP11X1B4DZS4 312 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FFAR3O14843 346 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 GPR42O15529 346 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 LINC00032P0C843 101 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 IL12AP29459 219 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 DLSTP36957 453 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FOLR3P41439 243 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 XCR1P46094 333 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 HMGCS1Q01581 520 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FAM219BQ5XKK7 198 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 CYP20A1Q6UW02 462 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 NET1Q7Z628 596 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FUNDC1Q8IVP5 155 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 SHISA5Q8N114 240 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 TMEM102Q8N9M5 508 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 OR11G2Q8NGC1 345 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 PSMF1Q92530 271 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ADIPOR1Q96A54 375 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 CLIP3Q96DZ5 547 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 CNRIP1Q96F85 164 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 LMF1Q96S06 567 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 CCDC106Q9BWC9 280 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 RPF2Q9H7B2 306 aaKnown RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FAM120CQ9NX05 1096 aaKnown RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 C19orf25Q9UFG5 118 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 NDOR1Q9UHB4 597 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 MRPS33Q9Y291 106 aaKnown RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 PTGDR2Q9Y5Y4 395 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FAM234BA2RU67 622 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 GMNCA6NCL1 334 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ASPDHA6ND91 283 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FGF17O60258 216 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 NADKO95544 446 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-202ENST00000394943 NTRK1P04629 796 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 KLK1P06870 262 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ICAM2P13598 275 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 CPMP14384 443 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 TACR1P25103 407 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 SERPINB3P29508 390 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 SSR2P43308 183 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 PHC1P78364 1004 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 GUCY1A3Q02108 690 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ACSM2AQ08AH3 577 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 LINC00303Q3SY05 128 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ZNF385BQ569K4 471 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 CCNYL2Q5T2Q4 361 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ARHGAP40Q5TG30 622 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 ACSM2BQ68CK6 577 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 BLOC1S3Q6QNY0 202 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 KBTBD2Q8IY47 623 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 TMEM132CQ8N3T6 1108 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 FBXL20Q96IG2 436 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 BTBD9Q96Q07 612 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 OR52B2Q96RD2 323 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 MACROD1Q9BQ69 325 aa6.56□□□□□ -1.36
LIMA1-202ENST00000394943 UNC13CQ8NB66 2214 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 TEX51A0A1B0GUA7 166 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 GABRR3A8MPY1 467 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 IDSB3KWA1 339 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 NGFRP08138 427 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 NAGAP17050 411 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 CSNK2A2P19784 350 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 MAPK12P53778 367 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 RPS15P62841 145 aaKnown RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 DUSP2Q05923 314 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 VAC14Q08AM6 782 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SPATS1Q496A3 300 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 TTC19Q6DKK2 380 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 RPUSD3Q6P087 351 aaKnown RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 PCSK4Q6UW60 755 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 ADCK2Q7Z695 626 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 DTWD1Q8N5C7 304 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 OR1N1Q8NGS0 311 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 RFWD2Q8NHY2 731 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 OR5P2Q8WZ92 322 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 AMDHD1Q96NU7 426 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 BARD1Q99728 777 aaKnown RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SORBS1Q9BX66 1292 aaKnown RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 CXorf21Q9HAI6 301 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SLC35C2Q9NQQ7 365 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 PRTFDC1Q9NRG1 225 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 MAT2BQ9NZL9 334 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 C19orf53Q9UNZ5 99 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 ERVK-11Q9UQG0 969 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 EIF3LQ9Y262 564 aaKnown RBP6.55□□□□□ -1.36
LIMA1-202ENST00000394943 SPACA6W5XKT8 324 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 FAM186AA6NE01 2351 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 ASNA1O43681 348 aa6.55□□□□□ -1.36
LIMA1-202ENST00000394943 FZD7O75084 574 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms