RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ATP6V1G2-DDX39BF2Z307 99 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 KHNYNO15037 678 aaKnown RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 ICMTO60725 284 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 B3GALNT1O75752 331 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 SNAPINO95295 136 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 ALDOAP04075 364 aaKnown RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 PITPNBP48739 271 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 RAB8AP61006 207 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 GPR33Q49SQ1 333 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 OR14C36Q8NHC7 312 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 SAMD11Q96NU1 681 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 MAGIXQ9H6Y5 334 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 GPN2Q9H9Y4 310 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 C19orf12Q9NSK7 152 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 GPATCH2Q9NW75 528 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 MYH3P11055 1940 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 HSBP1L1C9JCN9 74 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 AMY2AP04746 511 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 BDKRB1P46663 353 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 ABRAXAS2Q15018 415 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 PTCHD3Q3KNS1 767 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 LYSMD3Q7Z3D4 306 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 KCTD20Q7Z5Y7 419 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 FAM83FQ8NEG4 500 aaPredicted RBP11.39□□□□□ -0.59
SYNPO-202ENST00000394243 MFFQ9GZY8 342 aa11.39□□□□□ -0.59
SYNPO-202ENST00000394243 LOC105369274A0A096LPK9 316 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 CCDC163A0A0D9SF12 145 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 MAS1P04201 325 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 MAOAP21397 527 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 KDELR2P33947 212 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 GJA5P36382 358 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 DLSTP36957 453 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 CDK5R2Q13319 367 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 COQ5Q5HYK3 327 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 LCN8Q6JVE9 175 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 PXKQ7Z7A4 578 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 OR4N4Q8N0Y3 316 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 UPF1Q92900 1129 aaKnown RBP eCLIP11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ACBD6Q9BR61 282 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 PIGVQ9NUD9 493 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 KCTD3Q9Y597 815 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 SNRNP70P08621 437 aaKnown RBP11.38□□□□□ -0.59
SYNPO-202ENST00000394243 S1PR1P21453 382 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ARHGAP12Q8IWW6 846 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 THAP4Q8WY91 577 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 NTN4Q9HB63 628 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 KCNJ16Q9NPI9 418 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 DHDHQ9UQ10 334 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 B4GAT1O43505 415 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 SF3A2Q15428 464 aaKnown RBP11.38□□□□□ -0.59
SYNPO-202ENST00000394243 MPP7Q5T2T1 576 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 SHFQ7M4L6 423 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 OR56A1Q8NGH5 318 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 SCAMP5Q8TAC9 235 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 BORCS8Q96FH0 119 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 SLC29A1Q99808 456 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ALKBH4Q9NXW9 302 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 TAS2R8Q9NYW2 309 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 CACNG4Q9UBN1 327 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 LDB2O43679 373 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 EPHX1P07099 455 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ERCC1P07992 297 aaPredicted RBP11.38□□□□□ -0.59
SYNPO-202ENST00000394243 AFF3P51826 1226 aaKnown RBP11.38□□□□□ -0.59
SYNPO-202ENST00000394243 MS4A2Q01362 244 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 GPR19Q15760 415 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 OR14A2Q96R54 314 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 FEVQ99581 238 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 GPR20Q99678 358 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ARHGAP23Q9P227 1491 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 SOX30O94993 753 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ADH1AP07327 375 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 CBSLP0DN79 551 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 AGXTP21549 392 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 CBSP35520 551 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ACTC1P68032 377 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ACTA1P68133 377 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 PAPD4Q6PIY7 484 aaKnown RBP11.38□□□□□ -0.59
SYNPO-202ENST00000394243 SYT14Q8NB59 555 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 SOCS4Q8WXH5 440 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 NTAN1Q96AB6 310 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ARL5BQ96KC2 179 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 CCM2Q9BSQ5 444 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 PCDHAC2Q9Y5I4 1007 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 HEMK1Q9Y5R4 338 aaPredicted RBP11.38□□□□□ -0.59
SYNPO-202ENST00000394243 A8MUA0 341 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 BDKRB2P30411 391 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 MAGEB1P43366 347 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ABHD13Q7L211 337 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 ELP5Q8TE02 316 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 DGAT2Q96PD7 388 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 EPHA6Q9UF33 1036 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 DLGAP4Q9Y2H0 992 aa11.38□□□□□ -0.59
SYNPO-202ENST00000394243 COL3A1P02461 1466 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 TEX51A0A1B0GUA7 166 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 WNT9AO14904 365 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF821O75541 412 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 BLOC1S3Q6QNY0 202 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 C7orf61Q8IZ16 206 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 Q8N9G6 341 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 WDR20Q8TBZ3 569 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms