RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PIGFQ07326 219 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 KRT33BQ14525 404 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 OR4C11Q6IEV9 310 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 TBC1D19Q8N5T2 526 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 OR14C36Q8NHC7 312 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 CREB3L4Q8TEY5 395 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 FUNDC2Q9BWH2 189 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 DGCR6LQ9BY27 220 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 SLAMF7Q9NQ25 335 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 RAB23Q9ULC3 237 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 PCDHGA10Q9Y5H3 936 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 HEBP2Q9Y5Z4 205 aa20.44■□□□□ 0.86
TRIM54-202ENST00000380075 A0A0A6YYD5 115 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 CACNB4O00305 520 aaPredicted RBP20.43■□□□□ 0.86
TRIM54-202ENST00000380075 RGS10O43665 173 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 TMPRSS11DO60235 418 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 RNGTTO60942 597 aaKnown RBP20.43■□□□□ 0.86
TRIM54-202ENST00000380075 FAM20BO75063 409 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 GGT2P36268 569 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 EMP3P54852 163 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 GP2P55259 537 aaKnown RBP20.43■□□□□ 0.86
TRIM54-202ENST00000380075 CDH12P55289 794 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 UAP1L1Q3KQV9 507 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 MLIPQ5VWP3 458 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 PRSS48Q7RTY5 328 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 ARHGAP22Q7Z5H3 698 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 ADCK2Q7Z695 626 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 UBE3DQ7Z6J8 389 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 ZNF605Q86T29 641 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 LGI4Q8N135 537 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 ZNF540Q8NDQ6 660 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 ASB12Q8WXK4 309 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 SCARF2Q96GP6 870 aaPredicted RBP20.43■□□□□ 0.86
TRIM54-202ENST00000380075 NRTNQ99748 197 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 FAIM2Q9BWQ8 316 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 PREBQ9HCU5 417 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 TMEM184CQ9NVA4 438 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 ERVK-18Q9QC07 812 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 KCNK6Q9Y257 313 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 PCDHGA6Q9Y5G7 932 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 HEMK1Q9Y5R4 338 aaPredicted RBP20.43■□□□□ 0.86
TRIM54-202ENST00000380075 IFNW1P05000 195 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 EPHA2P29317 976 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 IGFALSP35858 605 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 OR1E2P47887 323 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 LIMS1P48059 325 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 CXCL12P48061 93 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 SLC5A8Q8N695 610 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 DTWD2Q8NBA8 298 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 MYOCQ99972 504 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 IER2Q9BTL4 223 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 APOOQ9BUR5 198 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 ZNF556Q9HAH1 456 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 SCML1Q9UN30 329 aa20.43■□□□□ 0.86
TRIM54-202ENST00000380075 PRAMEF33A0A0G2JMD5 474 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 LRIT2A6NDA9 550 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 PRAMEF25A6NGN4 478 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 LCMT2O60294 686 aaKnown RBP20.42■□□□□ 0.86
TRIM54-202ENST00000380075 PRAMEF10O60809 474 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 TNFRSF1BP20333 461 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 STT3AP46977 705 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 ZIC1Q15915 447 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 SPDYE7PQ495Y7 208 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 MAMSTRQ6ZN01 415 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 CCDC71Q8IV32 467 aaPredicted RBP20.42■□□□□ 0.86
TRIM54-202ENST00000380075 ENTHD1Q8IYW4 607 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 DEPDC4Q8N2C3 294 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 HORMAD2Q8N7B1 307 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 TBC1D15Q8TC07 691 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 RASSF5Q8WWW0 418 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 KLK6Q92876 244 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 SARGQ9BW04 601 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 TMEM121BQ9BXQ6 578 aaPredicted RBP20.42■□□□□ 0.86
TRIM54-202ENST00000380075 MRPS30Q9NP92 439 aaKnown RBP20.42■□□□□ 0.86
TRIM54-202ENST00000380075 SIRT3Q9NTG7 399 aaPredicted RBP20.42■□□□□ 0.86
TRIM54-202ENST00000380075 PLCXD1Q9NUJ7 323 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 PCDHGA2Q9Y5H1 932 aa20.42■□□□□ 0.86
TRIM54-202ENST00000380075 IGKV1-8A0A0C4DH67 115 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 GUCY1B2O75343 617 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 INMTO95050 263 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 HOXC4P09017 264 aaPredicted RBP20.41■□□□□ 0.86
TRIM54-202ENST00000380075 ACVR2AP27037 513 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 HTR1BP28222 390 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 AHRP35869 848 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 SSR2P43308 183 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 ADPRHP54922 357 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 CLCA4Q14CN2 919 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 EXOC3L2Q2M3D2 409 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 SYT6Q5T7P8 510 aaPredicted RBP20.41■□□□□ 0.86
TRIM54-202ENST00000380075 LAIR1Q6GTX8 287 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 C6orf120Q7Z4R8 191 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 P3H2Q8IVL5 708 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 C1orf210Q8IVY1 113 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 PARP8Q8N3A8 854 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 OR52E1Q8NGJ3 308 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 OCEL1Q9H607 264 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 HCN4Q9Y3Q4 1203 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 TCRBV21S2A2A0A5A6 115 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 TMEM247A6NEH6 219 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 PDZK1P1A8MUH7 402 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms