RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ABHD17CQ6PCB6 329 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 SLCO4C1Q6ZQN7 724 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 AGGF1Q8N302 714 aaeCLIP12.74□□□□□ -0.37
VPS29-201ENST00000360579 ZNF321PQ8N8H1 164 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 FAM45AQ8TCE6 357 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 ANKRD7Q92527 254 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 SPACA9Q96E40 222 aaPredicted RBP12.74□□□□□ -0.37
VPS29-201ENST00000360579 CAPZA3Q96KX2 299 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 RUNDC3BQ96NL0 473 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 EGFL8Q99944 293 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 NAT9Q9BTE0 207 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 ROGDIQ9GZN7 287 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 SLC6A15Q9H2J7 730 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 LYRM4Q9HD34 91 aa12.74□□□□□ -0.37
VPS29-201ENST00000360579 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.74□□□□□ -0.37
VPS29-201ENST00000360579 CD53P19397 219 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 SERPINB3P29508 390 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 OPRM1P35372 400 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 KCNC1P48547 511 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 SPANXN3Q5MJ09 141 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 TBCELQ5QJ74 424 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 PRAMEF20Q5VT98 475 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 POMZP3Q6PJE2 187 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 KRTAP1-3Q8IUG1 177 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 SRFBP1Q8NEF9 429 aaKnown RBP12.73□□□□□ -0.37
VPS29-201ENST00000360579 SPATA3Q8NHX4 192 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 LINC01560Q8TB33 94 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 ZNF721Q8TF20 911 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 COX4I2Q96KJ9 171 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 ART5Q96L15 291 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 KCNC2Q96PR1 638 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 MDFIQ99750 246 aa12.73□□□□□ -0.37
VPS29-201ENST00000360579 CSPG4Q6UVK1 2322 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 LRRC3CA6NJW4 275 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 EEF1E1-BLOC1S5C9J1V9 151 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 EEF1E1O43324 174 aaKnown RBP12.72□□□□□ -0.37
VPS29-201ENST00000360579 LDB3O75112 727 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 WDR47O94967 919 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 ETHE1O95571 254 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 LY6G6DO95868 133 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 IL18BPO95998 194 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 HRGP04196 525 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 CTSSP25774 331 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 GDF1P27539 372 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 TRPC1P48995 793 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 ZNF136P52737 540 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 CRYZQ08257 329 aaKnown RBP12.72□□□□□ -0.37
VPS29-201ENST00000360579 DUSP8Q13202 625 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 BIKQ13323 160 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 NSUN5P2Q63ZY6 315 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 FRA10AC1Q70Z53 315 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 PRIMA1Q86XR5 153 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 P3H2Q8IVL5 708 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 LRRC75A-AS1Q8N1F1 130 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 RASGEF1CQ8N431 466 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 NKAPQ8N5F7 415 aaKnown RBP12.72□□□□□ -0.37
VPS29-201ENST00000360579 NAT8LQ8N9F0 302 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 SIMC1Q8NDZ2 872 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 FAM13CQ8NE31 585 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 SMPDL3BQ92485 455 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 SENP5Q96HI0 755 aaPredicted RBP12.72□□□□□ -0.37
VPS29-201ENST00000360579 ZNF597Q96LX8 424 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 JSRP1Q96MG2 331 aaPredicted RBP12.72□□□□□ -0.37
VPS29-201ENST00000360579 DACH2Q96NX9 599 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 TIMP4Q99727 224 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 DOHHQ9BU89 302 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 REPIN1Q9BWE0 567 aaKnown RBP12.72□□□□□ -0.37
VPS29-201ENST00000360579 PRDM14Q9GZV8 571 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 EHD1Q9H4M9 534 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 GPRC5BQ9NZH0 403 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 OARD1Q9Y530 152 aa12.72□□□□□ -0.37
VPS29-201ENST00000360579 MYOCOSA0A1B0GUC4 107 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 ANKRD33BA6NCL7 494 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 CD8B2A6NJW9 211 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 KIAA1324LA8MWY0 1029 aaPredicted RBP12.71□□□□□ -0.37
VPS29-201ENST00000360579 C1QAP02745 245 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 IGKV3-11P04433 115 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 FBXO45P0C2W1 286 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 ZNF37AP17032 561 aaPredicted RBP12.71□□□□□ -0.37
VPS29-201ENST00000360579 MSH2P43246 934 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 RPL21P46778 160 aaKnown RBP12.71□□□□□ -0.37
VPS29-201ENST00000360579 STT3AP46977 705 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 SLC6A12P48065 614 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 Q5PR19 223 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 TTC27Q6P3X3 843 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 ADAMTSL2Q86TH1 951 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 C9orf40Q8IXQ3 194 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 PPIL6Q8IXY8 311 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 LRRN4CLQ8ND94 238 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 ISL2Q96A47 359 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 MAGOHBQ96A72 148 aaKnown RBP12.71□□□□□ -0.37
VPS29-201ENST00000360579 CERS2Q96G23 380 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 RBM18Q96H35 190 aaKnown RBP12.71□□□□□ -0.37
VPS29-201ENST00000360579 DGAT2Q96PD7 388 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 TBCDQ9BTW9 1192 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 EPB41L4BQ9H329 900 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 PPANQ9NQ55 473 aaKnown RBP12.71□□□□□ -0.37
VPS29-201ENST00000360579 PRDM7Q9NQW5 492 aa12.71□□□□□ -0.37
VPS29-201ENST00000360579 TRMT1Q9NXH9 659 aaKnown RBP12.71□□□□□ -0.37
VPS29-201ENST00000360579 JKAMPQ9P055 326 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms