RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 EXOSC8Q96B26 276 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 SEC16BQ96JE7 1060 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 INPP5KQ9BT40 448 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 BRINP2Q9C0B6 783 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 LIN28AQ9H9Z2 209 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 GMPR2Q9P2T1 348 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 ADGRE2Q9UHX3 823 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MCM8Q9UJA3 840 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 DTX4Q9Y2E6 619 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 RAXQ9Y2V3 346 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 HS3ST3B1Q9Y662 390 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 TRPC5OSA6NMA1 111 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 STMND1H3BQB6 276 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 FBP2O00757 339 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 B3GALT2O43825 422 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 T-ENOLP0DO92 83 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 S1PR1P21453 382 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 FBLP22087 321 aaKnown RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 CPN2P22792 545 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PTPN6P29350 595 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 DLSTP36957 453 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ARSFP54793 590 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ZNF763Q0D2J5 394 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 TBC1D25Q3MII6 688 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 FAM174BQ3ZCQ3 159 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 GTDC1Q4AE62 458 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SPIN4Q56A73 249 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 GK5Q6ZS86 529 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SCUBE1Q8IWY4 988 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CACNA2D3Q8IZS8 1091 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 NLGN4XQ8N0W4 816 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 NLGN4YQ8NFZ3 816 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 PPP3R2Q96LZ3 170 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 LRFN5Q96NI6 719 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PTCHD1Q96NR3 888 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CCDC106Q9BWC9 280 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 MYLK2Q9H1R3 596 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SERHLQ9NQF3 203 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 MAP10Q9P2G4 905 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ZNF282Q9UDV7 671 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 TCFL5Q9UL49 500 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 STK38LQ9Y2H1 464 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PCDHA9Q9Y5H5 950 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CAPN14A8MX76 684 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 SLCO1B7G3V0H7 640 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 TMX2-CTNND1H3BSU7 103 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PSMD12O00232 456 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 FCHO1O14526 889 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CLPSP04118 112 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 GSNP06396 782 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 DDCP20711 480 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 GSTM2P28161 218 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 GPR143P51810 404 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CLDN8P56748 225 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PCBP4P57723 403 aaKnown RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 TNFRSF17Q02223 184 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PDE7AQ13946 482 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 NSDHLQ15738 373 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 DESI1Q6ICB0 168 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SLC48A1Q6P1K1 146 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PRMT9Q6P2P2 845 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CYB5D1Q6P9G0 228 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 IGF2-ASQ6U949 168 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 KIF2BQ8N4N8 673 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 IL22RA1Q8N6P7 574 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 KAT2AQ92830 837 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 MVB12AQ96EY5 273 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 OTUB1Q96FW1 271 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 SLC39A3Q9BRY0 314 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 RSPO3Q9BXY4 272 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 MFRPQ9BY79 579 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ALOXE3Q9BYJ1 711 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 TGIF2Q9GZN2 237 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SLC26A1Q9H2B4 701 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 GLIPR2Q9H4G4 154 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 IKZF5Q9H5V7 419 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CPNE5Q9HCH3 593 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 GPATCH2Q9NW75 528 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SH3BP4Q9P0V3 963 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ZNF223Q9UK11 482 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 ACSL6Q9UKU0 697 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SRPK3Q9UPE1 567 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 FARSAQ9Y285 508 aaKnown RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 PTRH2Q9Y3E5 179 aaKnown RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 URADA6NGE7 173 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 TXNDC9O14530 226 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 PRMT3O60678 531 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 DNAJB5O75953 348 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 MYO1DO94832 1006 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 KLK3P07288 261 aaPredicted RBP3.77□□□□□ -1.81
LIG4-201ENST00000356922 AVPR1BP47901 424 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 XKP51811 444 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 RAB38P57729 211 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 HBA1P69905 142 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 ZNF33BQ06732 778 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 TGM3Q08188 693 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 CHAF1BQ13112 559 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 SLC13A2Q13183 592 aa3.77□□□□□ -1.81
LIG4-201ENST00000356922 NAA25Q14CX7 972 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms