RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 METTL21CQ5VZV1 264 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 FAAH2Q6GMR7 532 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 TICAM1Q8IUC6 712 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 RIMKLAQ8IXN7 391 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 FAM9CQ8IZT9 166 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 NUDT8Q8WV74 236 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 STARD8Q92502 1023 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 SLC45A3Q96JT2 553 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 CCT8L2Q96SF2 557 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 MESP1Q9BRJ9 268 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 REEP4Q9H6H4 257 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 SEMA3GQ9NS98 782 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 EHD3Q9NZN3 535 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 UTS2RQ9UKP6 389 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 PSME2Q9UL46 239 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 APC2O95996 2303 aa20.81■□□□□ 0.92
SDC3-202ENST00000339394 IGKV3D-11A0A0A0MRZ8 115 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 RRP8O43159 456 aaKnown RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 GPR75O95800 540 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 CYC1P08574 325 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 C8orf89P0DMQ9 161 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 PCSK2P16519 638 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 WT1P19544 449 aaPredicted RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 MMP11P24347 488 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 PPP2R1BP30154 601 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 ACTN3Q08043 901 aaPredicted RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 STX4Q12846 297 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 IL10RAQ13651 578 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 FAM180BQ6P0A1 224 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 METTL21AQ8WXB1 218 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 TEX37Q96LM6 180 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 DCBLD2Q96PD2 775 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 CCNL2Q96S94 520 aaPredicted RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 DPY30Q9C005 99 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 SDR39U1Q9NRG7 319 aaPredicted RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 TRIM33Q9UPN9 1127 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 SSUH2Q9Y2M2 353 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 RAXQ9Y2V3 346 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 GABRR3A8MPY1 467 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 EFSO43281 561 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 ERAL1O75616 437 aaKnown RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 NCF2P19878 526 aaPredicted RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 C21orf58P58505 322 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 UFM1P61960 85 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 PDE7AQ13946 482 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 PRSS53Q2L4Q9 553 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 ANKRD26P1Q6NSI1 321 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 TMEM205Q6UW68 189 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 PIGWQ7Z7B1 504 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 PROSER1Q86XN7 944 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 SPACA3Q8IXA5 215 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 OR4K14Q8NGD5 310 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 EXOSC8Q96B26 276 aaKnown RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 KLHL29Q96CT2 875 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 ALOXE3Q9BYJ1 711 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 TAS2R7Q9NYW3 318 aa20.8■□□□□ 0.92
SDC3-202ENST00000339394 COPG1Q9Y678 874 aaKnown RBP20.8■□□□□ 0.92
SDC3-202ENST00000339394 MYOCOSA0A1B0GUC4 107 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 A0A1W2PS29 197 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 TCRBV16S1A1N1A0A5B0 115 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 TAF4O00268 1085 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 SCAMP2O15127 329 aaKnown RBP20.79■□□□□ 0.92
SDC3-202ENST00000339394 FAM107AO95990 144 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 PIK3R1P27986 724 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 HPCAL1P37235 193 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 UGT8Q16880 541 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 ZNF750Q32MQ0 723 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 PDCD4Q53EL6 469 aaKnown RBP20.79■□□□□ 0.92
SDC3-202ENST00000339394 LANCL3Q6ZV70 420 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 R3HCC1LQ7Z5L2 792 aaKnown RBP20.79■□□□□ 0.92
SDC3-202ENST00000339394 NACC2Q96BF6 587 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 MTERF3Q96E29 417 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 CNRIP1Q96F85 164 aaPredicted RBP20.79■□□□□ 0.92
SDC3-202ENST00000339394 SH3BP4Q9P0V3 963 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 ATP6V1HQ9UI12 483 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 CHD8Q9HCK8 2581 aa20.79■□□□□ 0.92
SDC3-202ENST00000339394 IGHEP01854 428 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 OTX2P32243 289 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 XKP51811 444 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 IGLV3-21P80748 117 aaPredicted RBP20.78■□□□□ 0.92
SDC3-202ENST00000339394 SERTAD2Q14140 314 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 ANKRD37Q7Z713 158 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 MIER2Q8N344 545 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 OR7A2PQ8NGA2 310 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 C8orf44Q96CB5 159 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 PPCDCQ96CD2 204 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 ZNF764Q96H86 408 aaPredicted RBP20.78■□□□□ 0.92
SDC3-202ENST00000339394 SLC35C2Q9NQQ7 365 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 HS3ST3B1Q9Y662 390 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 ZNF780BQ9Y6R6 833 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 IGF2RP11717 2491 aa20.78■□□□□ 0.92
SDC3-202ENST00000339394 TBX19O60806 448 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 SLC22A3O75751 556 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 COX7A2P14406 83 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 RPL3P39023 403 aaKnown RBP20.77■□□□□ 0.92
SDC3-202ENST00000339394 FEN1P39748 380 aaKnown RBP20.77■□□□□ 0.92
SDC3-202ENST00000339394 MRPL19P49406 292 aaKnown RBP20.77■□□□□ 0.92
SDC3-202ENST00000339394 STX1BP61266 288 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 ZNF385BQ569K4 471 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 PAOXQ6QHF9 649 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms