RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 KIAA1614Q5VZ46 1190 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 SHQ1Q6PI26 577 aaKnown RBP11.8□□□□□ -0.52
RNF4-201ENST00000314289 Q6ZS52 159 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 MTSS1LQ765P7 747 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 SPARTQ8N0X7 666 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 OR52N2Q8NGI0 321 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 SH3YL1Q96HL8 342 aaPredicted RBP11.8□□□□□ -0.52
RNF4-201ENST00000314289 C7orf34Q96L11 122 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 BMFQ96LC9 184 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 YTHDF1Q9BYJ9 559 aaKnown RBP11.8□□□□□ -0.52
RNF4-201ENST00000314289 RHBGQ9H310 441 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 REEP1Q9H902 201 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 PELI2Q9HAT8 420 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 C3orf18Q9UK00 162 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 DNMT3AQ9Y6K1 912 aaPredicted RBP11.8□□□□□ -0.52
RNF4-201ENST00000314289 C2CD4DB7Z1M9 353 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 PRAMEF10O60809 474 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 CRHBPP24387 322 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 FMO3P31513 532 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 ARHGDIAP52565 204 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 KCNC4Q03721 635 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 SMN1Q16637 294 aaKnown RBP11.8□□□□□ -0.52
RNF4-201ENST00000314289 LAIR2Q6ISS4 152 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 NUDT13Q86X67 352 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 HIPK1Q86Z02 1210 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 RAB42Q8N4Z0 105 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 HORMAD2Q8N7B1 307 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 OR5D16Q8NGK9 328 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 TIMM29Q9BSF4 260 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 DOHHQ9BU89 302 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 KCNK12Q9HB15 430 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 TM9SF3Q9HD45 589 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 POLE4Q9NR33 117 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 RLIMQ9NVW2 624 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 ORC6Q9Y5N6 252 aa11.8□□□□□ -0.52
RNF4-201ENST00000314289 GPC6Q9Y625 555 aaPredicted RBP11.8□□□□□ -0.52
RNF4-201ENST00000314289 LRIT2A6NDA9 550 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 BCKDKO14874 412 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 SEMG1P04279 462 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 BCHEP06276 602 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 HTR1BP28222 390 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 PKLRP30613 574 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 PCGF2P35227 344 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 SELENOWP63302 87 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 DMPKQ09013 629 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 IQCCQ4KMZ1 466 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 NDUFAF5Q5TEU4 345 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 TTC23Q5W5X9 447 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 SLCO6A1Q86UG4 719 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 CADM3Q8N126 398 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 CHDHQ8NE62 594 aaPredicted RBP11.79□□□□□ -0.52
RNF4-201ENST00000314289 OR2L3Q8NG85 312 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 OR10G6Q8NH81 332 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 CREB3L4Q8TEY5 395 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 LCN9Q8WX39 176 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 RGMAQ96B86 450 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 CXorf40BQ96DE9 158 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 OR2M4Q96R27 311 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 ZNF347Q96SE7 839 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 NLNQ9BYT8 704 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 GPN2Q9H9Y4 310 aaPredicted RBP11.79□□□□□ -0.52
RNF4-201ENST00000314289 C2orf42Q9NWW7 574 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 NCKAP1Q9Y2A7 1128 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 PGRMC2O15173 223 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 PDPK1O15530 556 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 AQP9O43315 295 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 INMTO95050 263 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 HPRP00739 348 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 ATXN8OSP0DMR3 200 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 CDH12P55289 794 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 ZNF846Q147U1 533 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 OXA1LQ15070 435 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 DUSP7Q16829 419 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 ZNF362Q5T0B9 420 aaPredicted RBP11.79□□□□□ -0.52
RNF4-201ENST00000314289 GTF2IRD2BQ6EKJ0 949 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 OR4C11Q6IEV9 310 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 TRIM40Q6P9F5 258 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 GTF2IRD2Q86UP8 949 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 ZNF761Q86XN6 746 aaPredicted RBP11.79□□□□□ -0.52
RNF4-201ENST00000314289 KCT2Q8NC54 265 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 PJA1Q8NG27 643 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 GOT1L1Q8NHS2 421 aaPredicted RBP11.79□□□□□ -0.52
RNF4-201ENST00000314289 DOK4Q8TEW6 326 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 C1QTNF7Q9BXJ2 289 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 TCEAL2Q9H3H9 227 aaPredicted RBP11.79□□□□□ -0.52
RNF4-201ENST00000314289 NDUFAF4Q9P032 175 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 SPATA7Q9P0W8 599 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 ZNF624Q9P2J8 865 aaPredicted RBP11.79□□□□□ -0.52
RNF4-201ENST00000314289 FRYLO94915 3013 aa11.79□□□□□ -0.52
RNF4-201ENST00000314289 PPIBP23284 216 aaKnown RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 CERS1P27544 350 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 DNAJA1P31689 397 aaKnown RBP11.78□□□□□ -0.52
RNF4-201ENST00000314289 HSD17B2P37059 387 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 HEPACAMQ14CZ8 416 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 CARTPTQ16568 116 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 C18orf63Q68DL7 685 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 GPR153Q6NV75 609 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 SMRP1Q8NCR6 262 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 PIK3C3Q8NEB9 887 aa11.78□□□□□ -0.52
RNF4-201ENST00000314289 ITPKCQ96DU7 683 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms