RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CBLL1Q75N03 491 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 GALNT10Q86SR1 603 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 CAMKVQ8NCB2 501 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 UTP15Q8TED0 518 aaKnown RBP13.5□□□□□ -0.25
C9orf3-202ENST00000297979 RSC1A1Q92681 617 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 TMEM38AQ9H6F2 299 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 SLC35C2Q9NQQ7 365 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 TUBA8Q9NY65 449 aaPredicted RBP13.5□□□□□ -0.25
C9orf3-202ENST00000297979 ZNF639Q9UID6 485 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 CARD8Q9Y2G2 431 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 URADA6NGE7 173 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 UPK1AO00322 258 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 ZNF16P17020 682 aaPredicted RBP13.5□□□□□ -0.25
C9orf3-202ENST00000297979 TYRP1P17643 537 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 NTSP30990 170 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 MRPL28Q13084 256 aaKnown RBP13.5□□□□□ -0.25
C9orf3-202ENST00000297979 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.5□□□□□ -0.25
C9orf3-202ENST00000297979 FKBP9P1Q75LS8 142 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 RNF44Q7L0R7 432 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 EIF3MQ7L2H7 374 aaKnown RBP13.5□□□□□ -0.25
C9orf3-202ENST00000297979 RERGQ96A58 199 aaPredicted RBP13.5□□□□□ -0.25
C9orf3-202ENST00000297979 NEURL3Q96EH8 262 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 ROGDIQ9GZN7 287 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 BATF3Q9NR55 127 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 C1GALT1Q9NS00 363 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 SIRT3Q9NTG7 399 aaPredicted RBP13.5□□□□□ -0.25
C9orf3-202ENST00000297979 POMT2Q9UKY4 750 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 SNX11Q9Y5W9 270 aa13.5□□□□□ -0.25
C9orf3-202ENST00000297979 GLOD5A6NK44 160 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 EI24O14681 340 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 FASLGP48023 281 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 PRIM2P49643 509 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 PPP1CAP62136 330 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 SUZ12Q15022 739 aaKnown RBP13.49□□□□□ -0.25
C9orf3-202ENST00000297979 SAXO2Q658L1 398 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 DGLUCYQ7Z3D6 616 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 ARL14Q8N4G2 192 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 OR10Q1Q8NGQ4 319 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 MAFAQ8NHW3 353 aaPredicted RBP13.49□□□□□ -0.25
C9orf3-202ENST00000297979 PSMA8Q8TAA3 256 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 TMBIM1Q969X1 311 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 TMA7Q9Y2S6 64 aaKnown RBP13.49□□□□□ -0.25
C9orf3-202ENST00000297979 LYNP07948 512 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 MAGEA2P43356 314 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 CDK9P50750 372 aaKnown RBP13.49□□□□□ -0.25
C9orf3-202ENST00000297979 HNRNPKP61978 463 aaKnown RBP eCLIP13.49□□□□□ -0.256e-13■■■□□ 15
C9orf3-202ENST00000297979 CAMK2BQ13554 666 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 SCARB2Q14108 478 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 SPDYE7PQ495Y7 208 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 C18orf63Q68DL7 685 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 FRMPD2BQ6IN97 320 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 TMEM214Q6NUQ4 689 aaKnown RBP13.49□□□□□ -0.25
C9orf3-202ENST00000297979 ZFP28Q8NHY6 868 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 ZCCHC10Q8TBK6 192 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 CNBD2Q96M20 576 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 AMDHD1Q96NU7 426 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 MUTYHQ9UIF7 546 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 PADI4Q9UM07 663 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 GOLGA4Q13439 2230 aaKnown RBP13.49□□□□□ -0.25
C9orf3-202ENST00000297979 LOC105369274A0A096LPK9 316 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 LOC102723532A0A0G2JNH3 316 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 H0YGG7 62 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 PGRMC2O15173 223 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 VILLO15195 856 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 AQP9O43315 295 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 PROM1O43490 865 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 PRAMEF10O60809 474 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 PAHP00439 452 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 SMIM10L1P0DMW3 83 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 AQP1P29972 269 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 CENPAP49450 140 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 ARF3P61204 181 aaPredicted RBP13.49□□□□□ -0.25
C9orf3-202ENST00000297979 ZNF630Q2M218 657 aaPredicted RBP13.49□□□□□ -0.25
C9orf3-202ENST00000297979 SLC48A1Q6P1K1 146 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 KLHL35Q6PF15 583 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 ZNF438Q7Z4V0 828 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 OR4N4Q8N0Y3 316 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 DNASE2BQ8WZ79 361 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 SMIM10Q96HG1 83 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 HSH2DQ96JZ2 352 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 BBS4Q96RK4 519 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 MAPKAP1Q9BPZ7 522 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 GLIPR2Q9H4G4 154 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 UCK1Q9HA47 277 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 ADPRHL2Q9NX46 363 aa13.49□□□□□ -0.25
C9orf3-202ENST00000297979 GNGT2O14610 69 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 ERAL1O75616 437 aaKnown RBP13.48□□□□□ -0.25
C9orf3-202ENST00000297979 SEMG1P04279 462 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 CSNK1EP49674 416 aaKnown RBP13.48□□□□□ -0.25
C9orf3-202ENST00000297979 NCBP2P52298 156 aaKnown RBP eCLIP13.48□□□□□ -0.256e-7■■■■■ 27.1
C9orf3-202ENST00000297979 DSTNP60981 165 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 DMWDQ09019 674 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 NHSL2Q5HYW2 709 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 TMEM154Q6P9G4 183 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 ABHD13Q7L211 337 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 ZDHHC21Q8IVQ6 265 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 ZNF655Q8N720 491 aaPredicted RBP13.48□□□□□ -0.25
C9orf3-202ENST00000297979 NFKBIDQ8NI38 313 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 SERINC2Q96SA4 455 aa13.48□□□□□ -0.25
C9orf3-202ENST00000297979 ASPSCR1Q9BZE9 553 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms