RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 VTI1BQ9UEU0 232 aa12.49□□□□□ -0.41
VPS28-201ENST00000292510 HEMK1Q9Y5R4 338 aaPredicted RBP12.49□□□□□ -0.41
VPS28-201ENST00000292510 CNTRLQ7Z7A1 2325 aa12.49□□□□□ -0.41
VPS28-201ENST00000292510 PRRC2CQ9Y520 2896 aaKnown RBP12.48□□□□□ -0.41
VPS28-201ENST00000292510 BLACEA4D250 179 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 BIRC5O15392 142 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 PCDH7O60245 1069 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 KLHL41O60662 606 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 DPM1O60762 260 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 TNNI3P19429 210 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 BGNP21810 368 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 WDR4P57081 412 aaKnown RBP12.48□□□□□ -0.41
VPS28-201ENST00000292510 IGLV3-21P80748 117 aaPredicted RBP12.48□□□□□ -0.41
VPS28-201ENST00000292510 ACSM2AQ08AH3 577 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 MFAP5Q13361 173 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 SERTAD2Q14140 314 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 ELAVL1Q15717 326 aaKnown RBP12.48□□□□□ -0.41
VPS28-201ENST00000292510 ZNF750Q32MQ0 723 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 UGT3A2Q3SY77 523 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 SPIN4Q56A73 249 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 ACSM2BQ68CK6 577 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 JMJD6Q6NYC1 403 aaPredicted RBP12.48□□□□□ -0.41
VPS28-201ENST00000292510 IGFL2Q6UWQ7 119 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 IGFL3Q6UXB1 125 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 DGAT2L6Q6ZPD8 337 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 PRICKLE2Q7Z3G6 844 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 TRIM46Q7Z4K8 759 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 ZNF321PQ8N8H1 164 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 APCDD1LQ8NCL9 501 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 B3GNT7Q8NFL0 401 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 OR2T11Q8NH01 316 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 DNAJB14Q8TBM8 379 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 ELP5Q8TE02 316 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 PTPMT1Q8WUK0 201 aaPredicted RBP12.48□□□□□ -0.41
VPS28-201ENST00000292510 NCLNQ969V3 563 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 EPS8L2Q9H6S3 715 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 WDR41Q9HAD4 459 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 EML4Q9HC35 981 aaKnown RBP12.48□□□□□ -0.41
VPS28-201ENST00000292510 ZDHHC2Q9UIJ5 367 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 MCM8Q9UJA3 840 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 ZNF223Q9UK11 482 aaPredicted RBP12.48□□□□□ -0.41
VPS28-201ENST00000292510 TRAF6Q9Y4K3 522 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 CCL27Q9Y4X3 112 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 DNAJC15Q9Y5T4 150 aa12.48□□□□□ -0.41
VPS28-201ENST00000292510 TRBV11-1A0A0K0K1C0 115 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 GNG14A0A1W2PPG7 69 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 C17orf105B2RV13 164 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 SUV39H1O43463 412 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 RSL1D1O76021 490 aaKnown RBP12.47□□□□□ -0.41
VPS28-201ENST00000292510 SERPINE1P05121 402 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 FGF4P08620 206 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 LINC00032P0C843 101 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 TIA1P31483 386 aaKnown RBP eCLIP12.47□□□□□ -0.41
VPS28-201ENST00000292510 STT3AP46977 705 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 GPR143P51810 404 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 TAS2R50P59544 299 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 AP2B1P63010 937 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 TERF2Q15554 542 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 AGBL2Q5U5Z8 902 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 HHATQ5VTY9 493 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 SLC6A19Q695T7 634 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 OR52E8Q6IFG1 317 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 FAM180BQ6P0A1 224 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 Q6ZSR9 355 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 HDXQ7Z353 690 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 CRLF3Q8IUI8 442 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 CLYBLQ8N0X4 340 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 ZADH2Q8N4Q0 377 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 THAP3Q8WTV1 239 aaPredicted RBP12.47□□□□□ -0.41
VPS28-201ENST00000292510 TWIST2Q8WVJ9 160 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 C11orf24Q96F05 449 aaPredicted RBP12.47□□□□□ -0.41
VPS28-201ENST00000292510 DGAT2Q96PD7 388 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 C20orf27Q9GZN8 174 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 HEY2Q9UBP5 337 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 ANAPC2Q9UJX6 822 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 DLGAP4Q9Y2H0 992 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 POLR3HQ9Y535 204 aaPredicted RBP12.47□□□□□ -0.41
VPS28-201ENST00000292510 PCDHA9Q9Y5H5 950 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 CLCA3PQ9Y6N3 262 aa12.47□□□□□ -0.41
VPS28-201ENST00000292510 PYCARD-AS1I3L0S3 204 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 HRKO00198 91 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 PIP5K1BO14986 540 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 SLC28A2O43868 658 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 PRKNO60260 465 aaPredicted RBP12.46□□□□□ -0.41
VPS28-201ENST00000292510 HSPA4LO95757 839 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 GPR75O95800 540 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 WDPCPO95876 746 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 CHEK2O96017 543 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 IL3P08700 152 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 ANXA4P09525 319 aaPredicted RBP12.46□□□□□ -0.41
VPS28-201ENST00000292510 NEFHP12036 1026 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 ALOX15P16050 662 aaPredicted RBP12.46□□□□□ -0.41
VPS28-201ENST00000292510 SERPINB5P36952 375 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 ALDH9A1P49189 494 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 ABCE1P61221 599 aaKnown RBP12.46□□□□□ -0.41
VPS28-201ENST00000292510 ARG2P78540 354 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 PLEKHN1Q494U1 663 aaPredicted RBP12.46□□□□□ -0.41
VPS28-201ENST00000292510 TTMPQ5BVD1 217 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 ACER2Q5QJU3 275 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 ABHD17BQ5VST6 288 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms