RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FAM83CQ9BQN1 747 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 OR6C65A6NJZ3 312 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 B4DGG1 531 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 MSI1O43347 362 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 CD6P30203 668 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 DBPQ10586 325 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 PON2Q15165 354 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ENPP7Q6UWV6 458 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 NANPQ8TBE9 248 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 PITX2Q99697 317 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 OSBPL2Q9H1P3 480 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 MOB1AQ9H8S9 216 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ABCB8Q9NUT2 735 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 IMPDH1P20839 514 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 MPPED2Q15777 294 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 C9orf131Q5VYM1 1079 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 OR5AK3PQ8NH89 298 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 SDSLQ96GA7 329 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ZDHHC3Q9NYG2 299 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 MAT2AP31153 395 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 SHMT1P34896 483 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 DSC2Q02487 901 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ANKRD23Q86SG2 305 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 LDB1Q86U70 411 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 NAA40Q86UY6 237 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 TSTD1Q8NFU3 115 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 OR4D6Q8NGJ1 314 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 HAVCR2Q8TDQ0 301 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ACTRT3Q9BYD9 372 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 POT1Q9NUX5 634 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ANKRD63C9JTQ0 380 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 PTPN2P17706 415 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 KCNJ11Q14654 390 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 C19orf35Q6ZS72 473 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 NCDNQ9UBB6 729 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 PRKCAP17252 672 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 BRAT1Q6PJG6 821 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 DUSP9Q99956 384 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 DNAJC27Q9NZQ0 273 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 KLHL9Q9P2J3 617 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 STUB1Q9UNE7 303 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF8P17098 575 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 CPT2P23786 658 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 NMBRP28336 390 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 MC2RQ01718 297 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 NBPF12Q5TAG4 269 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 RTL6Q6ICC9 239 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 BOLLQ8N9W6 283 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 JPH3Q8WXH2 748 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 LPPQ93052 612 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 RBMXL1Q96E39 390 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 CARS2Q9HA77 564 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 A8MV72 311 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ACOT7O00154 380 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 UGT3A2Q3SY77 523 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 FAM205BPQ63HN1 556 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF440Q8IYI8 595 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 CGREF1Q99674 301 aa13.41□□□□□ -0.26
CCDC88A-201ENST00000263630 J3QRK9 145 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 BEST1O76090 585 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 SERPINE2P07093 398 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 L1CAMP32004 1257 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 CCINQ13939 588 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 UBXN2BQ14CS0 331 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 PPTC7Q8NI37 304 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 HSPBAP1Q96EW2 488 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF780AO75290 641 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 RFWD3Q6PCD5 774 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 BRICD5Q6PL45 260 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 SVBPQ8N300 66 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 ACOT11Q8WXI4 607 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 PYCR2Q96C36 320 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 TMEM74Q96NL1 305 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 CNN2Q99439 309 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 PCDH17O14917 1159 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 GPR137BO60478 399 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 CREG1O75629 220 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 CRYZL1O95825 349 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 OAS1P00973 400 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 NKX3-2P78367 333 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 SETD7Q8WTS6 366 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 OR1E3Q8WZA6 343 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 COG8Q96MW5 612 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 GPR88Q9GZN0 384 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 UNC13BO14795 1591 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 FAM237AA0A1B0GTK4 181 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 JMJD7P0C870 316 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 WASP42768 502 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 NR4A2P43354 598 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 LCLAT1Q6UWP7 414 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 FAM83FQ8NEG4 500 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 RELTQ969Z4 430 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 PELOQ9BRX2 385 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC6A17Q9H1V8 727 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 TP63Q9H3D4 680 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 CPED1A4D0V7 1026 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 NUDT6P53370 316 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 HAPLN3Q96S86 360 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 SMIM35A0A1B0GVV1 85 aa13.4□□□□□ -0.26
CCDC88A-201ENST00000263630 CYP27C1Q4G0S4 372 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms