RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 OR2G6Q5TZ20 316 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 KIAA1841Q6NSI8 718 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 C22orf39Q6P5X5 142 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 TRIM40Q6P9F5 258 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 BRAT1Q6PJG6 821 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 KRT73Q86Y46 540 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 REM2Q8IYK8 340 aaPredicted RBP11.8□□□□□ -0.52
NUP88-201ENST00000225696 RDH10Q8IZV5 341 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 CRIPAKQ8N1N5 446 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 OXR1Q8N573 874 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 HORMAD2Q8N7B1 307 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 RASGEF1AQ8N9B8 481 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 SIMC1Q8NDZ2 872 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 OR56A3Q8NH54 315 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 SLC38A5Q8WUX1 472 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 ZNF480Q8WV37 535 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 REPS1Q96D71 796 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 TM9SF2Q99805 663 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 RIOK2Q9BVS4 552 aaKnown RBP11.8□□□□□ -0.52
NUP88-201ENST00000225696 UCK2Q9BZX2 261 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 MVB12BQ9H7P6 319 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 TMEM39AQ9NV64 488 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 GULP1Q9UBP9 304 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 SEC14L4Q9UDX3 406 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 LRFN2Q9ULH4 789 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 SNX7Q9UNH6 387 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 AP1M2Q9Y6Q5 423 aa11.8□□□□□ -0.52
NUP88-201ENST00000225696 IQCMA0A1B0GVH7 501 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 A0A1W2PRB8 838 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 CCDC182A6NF36 153 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 TLX2O43763 284 aaPredicted RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 MPZL2O60487 215 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 B4GALT2O60909 372 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 TMCC2O75069 709 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 BCHEP06276 602 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 IL3P08700 152 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 HSD3B1P14060 373 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 NPPBP16860 134 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 HSD3B2P26439 372 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 APEX1P27695 318 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 CD79BP40259 229 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 ATN1P54259 1190 aaPredicted RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 SNRPD1P62314 119 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 CHRNEQ04844 493 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 ASAH1Q13510 395 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 SLBPQ14493 270 aaKnown RBP eCLIP11.79□□□□□ -0.52
NUP88-201ENST00000225696 ZNF630Q2M218 657 aaPredicted RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 SLC35F1Q5T1Q4 408 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 FAM71E1Q6IPT2 247 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 MED27Q6P2C8 311 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 HOMEZQ8IX15 550 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 FAM181AQ8N9Y4 354 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 PCSK9Q8NBP7 692 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 TM9SF4Q92544 642 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 DCLRE1CQ96SD1 692 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 GPA33Q99795 319 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 MCOLN1Q9GZU1 580 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 SLC22A4Q9H015 551 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 TVP23BQ9NYZ1 205 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 TAAR2Q9P1P5 351 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 C5AR2Q9P296 337 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 CFAP97Q9P2B7 532 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 MALT1Q9UDY8 824 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 NDRG2Q9UN36 371 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 GOLGA4Q13439 2230 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 TRAV19A0A0A6YYK7 116 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 SMLR1H3BR10 107 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 AKR7A2O43488 359 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 CPNE3O75131 537 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 EFEMP2O95967 443 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 CST5P28325 142 aaPredicted RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 XKP51811 444 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 TBPL1P62380 186 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 RPS25P62851 125 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 RUNX1T1Q06455 604 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 ZNF33BQ06732 778 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 PCDH1Q08174 1060 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 ILKQ13418 452 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 KCNC3Q14003 757 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 EFR3AQ14156 821 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 NCF4Q15080 339 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 ATAT1Q5SQI0 421 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 C12orf73Q69YU5 71 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 PGBD2Q6P3X8 592 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 DEF8Q6ZN54 512 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 USP30Q70CQ3 517 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 C2orf73Q8N5S3 287 aaPredicted RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 ATP6V1C2Q8NEY4 427 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 SLC7A13Q8TCU3 470 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 TRMT2BQ96GJ1 504 aaKnown RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 MAGEB10Q96LZ2 347 aaPredicted RBP11.79□□□□□ -0.52
NUP88-201ENST00000225696 NELL2Q99435 816 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 MND1Q9BWT6 205 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 FAM83DQ9H4H8 585 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 MTG2Q9H4K7 406 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 IL21Q9HBE4 155 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 SSR3Q9UNL2 185 aa11.79□□□□□ -0.52
NUP88-201ENST00000225696 OR6C70A6NIJ9 312 aa11.78□□□□□ -0.52
NUP88-201ENST00000225696 RPS5P46782 204 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms