RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ARMCX6Q7L4S7 300 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 TIGD4Q8IY51 512 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 LRRC25Q8N386 305 aaPredicted RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 OR10T2Q8NGX3 314 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 SPEF1Q9Y4P9 236 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 UNC119BA6NIH7 251 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 RBBP9O75884 186 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 EDNRBP24530 442 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 GRIA2P42262 883 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 GCGRP47871 477 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 GATMP50440 423 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 DUSP3P51452 185 aaPredicted RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 HK3P52790 923 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 SELENOVP59797 346 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 POU4F2Q12837 409 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 DEFB134Q4QY38 66 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 C6orf120Q7Z4R8 191 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 GPAT4Q86UL3 456 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 Q8N9G6 341 aaPredicted RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 TBCCD1Q9NVR7 557 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 SLC22A31A6NKX4 558 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 SOBPA7XYQ1 873 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 SPARCP09486 303 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 PET100P0DJ07 73 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 SOX2P48431 317 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 RPL6Q02878 288 aaKnown RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 GALNT1Q10472 559 aaPredicted RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 NPRL3Q12980 569 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 CEACAM7Q14002 265 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 RAB39AQ14964 217 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 ABRAXAS2Q15018 415 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 SLC36A3Q495N2 470 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 OGFRL1Q5TC84 451 aaPredicted RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 MAMDC4Q6UXC1 1216 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 LRRC15Q8TF66 581 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 THAP4Q8WY91 577 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 TRIM43Q96BQ3 446 aaPredicted RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 MGLLQ99685 303 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 PDE7BQ9NP56 450 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 RDH8Q9NYR8 311 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF806P0C7X5 589 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 LHCGRP22888 699 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 HLCSP50747 726 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 RPS15AP62244 130 aaKnown RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 RCAN2Q14206 197 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 GAS6Q14393 721 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 PIGGQ5H8A4 983 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 CENPSQ8N2Z9 138 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 CNIH3Q8TBE1 160 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 KIAA1143Q96AT1 154 aaPredicted RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 DPH7Q9BTV6 452 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 MYNNQ9NPC7 610 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 GPRC5BQ9NZH0 403 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 MARCH4Q9P2E8 410 aaPredicted RBP13□□□□□ -0.33
SF3A1-201ENST00000215793 KCNIP3Q9Y2W7 256 aa13□□□□□ -0.33
SF3A1-201ENST00000215793 LOC100509620A0A075B734 347 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 A0A1W2PP55 124 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 CLRN1P58418 232 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 RIN1Q13671 783 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 NXPE4Q6UWF7 544 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 LRRN1Q6UXK5 716 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 BAIAP2L2Q6UXY1 529 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 OR51A7Q8NH64 312 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 POTEKPQ9BYX7 375 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 CDC40O60508 579 aaKnown RBP eCLIP12.99□□□□□ -0.33
SF3A1-201ENST00000215793 KLF8O95600 359 aaPredicted RBP12.99□□□□□ -0.33
SF3A1-201ENST00000215793 DPP6P42658 865 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 ENTPD1P49961 510 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 PER3P56645 1201 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 NIPAL4Q0D2K0 466 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 SPHARQ15513 63 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 LIPKQ5VXJ0 399 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 OR52P1PQ8NH57 321 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 NINJ1Q92982 152 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 KATNBL1Q9H079 304 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 ZFR2Q9UPR6 939 aaKnown RBP12.99□□□□□ -0.33
SF3A1-201ENST00000215793 CARD8Q9Y2G2 431 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 IGKV6-21A0A0C4DH24 114 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 PRKYO43930 277 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 H2BFMP0C1H6 154 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 PTGS2P35354 604 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF84P51523 738 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 KCTD9Q7L273 389 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 GPRIN1Q7Z2K8 1008 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 OR5T2Q8NGG2 359 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 SARDHQ9UL12 918 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 ABCC6O95255 1503 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 CCNOP22674 350 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 CDKN2DP55273 166 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 FXYD6P3P58550 94 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF440Q8IYI8 595 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 CASTOR1Q8WTX7 329 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 BORCS8Q96FH0 119 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 DEFB126Q9BYW3 111 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 SFXN1Q9H9B4 322 aa12.99□□□□□ -0.33
SF3A1-201ENST00000215793 PAK1IP1Q9NWT1 392 aaPredicted RBP12.99□□□□□ -0.33
SF3A1-201ENST00000215793 A0A1W2PQU0 124 aa12.98□□□□□ -0.33
SF3A1-201ENST00000215793 GXYLT2A0PJZ3 443 aa12.98□□□□□ -0.33
SF3A1-201ENST00000215793 CSF2P04141 144 aa12.98□□□□□ -0.33
SF3A1-201ENST00000215793 HSD17B1P14061 328 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms