RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ETFRF1Q6IPR1 90 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC8B1Q6J4K2 584 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NT5DC3Q86UY8 548 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DNAJC10Q8IXB1 793 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CBARPQ8N350 705 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CT45A3Q8NHU0 189 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 JPH3Q8WXH2 748 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SYT15Q9BQS2 421 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SAMD10Q9BYL1 202 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ADAM19Q9H013 955 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SRA1Q9HD15 236 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MKKSQ9NPJ1 570 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 IMP3Q9NV31 184 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DNAJB11Q9UBS4 358 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NUFIP1Q9UHK0 495 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FADS3Q9Y5Q0 445 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 N4BP2Q86UW6 1770 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MAST4O15021 2626 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NBEAL1Q6ZS30 2694 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 KIAA0556O60303 1618 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC22A1O15245 554 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ST8SIA5O15466 376 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF207O43670 478 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RCBTB2O95199 551 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 LRATO95237 230 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PTBP3O95758 552 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SCGB1D2O95969 90 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MT-CYBP00156 380 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 UCHL1P09936 223 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZDHHC11BP0C7U3 371 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MYBP10242 640 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC2A1P11166 492 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TCN2P20062 427 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TBPP20226 339 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CRABP2P29373 138 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GRIA1P42261 906 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ENTPD1P49961 510 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PPP5CP53041 499 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RTP1P59025 263 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DLX2Q07687 328 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MAP4K2Q12851 820 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TLR1Q15399 786 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FKBP1CQ5VVH2 108 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GLT8D1Q68CQ7 371 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 IDO2Q6ZQW0 420 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TMPRSS7Q7RTY8 843 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDH26Q8IXH8 852 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 UNC5BQ8IZJ1 945 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR2T34Q8NGX1 318 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR10R2Q8NGX6 335 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR2T3Q8NH03 318 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF675Q8TD23 568 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 UHRF2Q96PU4 802 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NSUN3Q9H649 340 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GPN2Q9H9Y4 310 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SPAG4Q9NPE6 437 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PLK2Q9NYY3 685 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM181Q9P2C4 612 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PRPF19Q9UMS4 504 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SRPK3Q9UPE1 567 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZFYVE16Q7Z3T8 1539 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDRT15L2A8MXV6 281 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 H3BMQ9 156 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 AIREO43918 545 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PENKP01210 267 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PIGRP01833 764 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 C8GP07360 202 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MMP2P08253 660 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MYCLP1P12525 358 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NT5EP21589 574 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 IGFBP5P24593 272 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RABIFP47224 123 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDH17Q12864 832 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TGFBIQ15582 683 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ADAMTSL2Q86TH1 951 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TUSC5Q8IXB3 177 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 BEST3Q8N1M1 668 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF611Q8N823 705 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR4F15Q8NGB8 312 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ACTL9Q8TC94 416 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 INTS12Q96CB8 462 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MCMBPQ9BTE3 642 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FNDC11Q9BVV2 318 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF416Q9BWM5 594 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CELF4Q9BZC1 486 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OCEL1Q9H607 264 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DDX43Q9NXZ2 648 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 LHX6Q9UPM6 363 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 KCTD3Q9Y597 815 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RPS6KL1Q9Y6S9 549 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NCANO14594 1321 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 A0A0G2JLW4 131 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 F6UZH7 168 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SPP1P10451 314 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DEFA4P12838 97 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 IL7RP16871 459 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF182P17025 639 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RPL7P18124 248 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 COMTP21964 271 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MAPK3P27361 379 aaPredicted RBP2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms