RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	MLC1	Q15049	377 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	RABL3	Q5HYI8	236 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	C18orf63	Q68DL7	685 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	NAXD	Q8IW45	347 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	SAMD14	Q8IZD0	417 aa	Predicted RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	CA13	Q8N1Q1	262 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	TRIML2	Q8N7C3	387 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	OR4A15	Q8NGL6	344 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	OR9A4	Q8NGU2	314 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	OR1L3	Q8NH93	324 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	TANK	Q92844	425 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	UCN3	Q969E3	161 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF501	Q96CX3	271 aa	Predicted RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	ZBED6CL	Q96FA7	236 aa	Predicted RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	CCDC74B	Q96LY2	380 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	BBS4	Q96RK4	519 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	CDC6	Q99741	560 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	ECSIT	Q9BQ95	431 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	THUMPD3	Q9BV44	507 aa	Known RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	DENND2D	Q9H6A0	471 aa	Predicted RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	FGF21	Q9NSA1	209 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	SLC6A13	Q9NSD5	602 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	CUTC	Q9NTM9	273 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	TAS2R9	Q9NYW1	312 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF282	Q9UDV7	671 aa	Predicted RBP	11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	BCAP29	Q9UHQ4	241 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	UTS2R	Q9UKP6	389 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	POMP	Q9Y244	141 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	GMEB1	Q9Y692	573 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823	PCNX2	A6NKB5	2137 aa		11.12	□□□□□ -0.63
CLN6-223	ENST00000637823		A0A0A6YYC8	382 aa	Predicted RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	BLACE	A4D250	179 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	PRORSD1P	A6NEY8	169 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF860	A6NHJ4	632 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	GLOD5	A6NK44	160 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823		D6RAR5	112 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823		H0YIG0	161 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823		I3L1I5	382 aa	Predicted RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	CYR61	O00622	381 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	CHST10	O43529	356 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	CBFA2T3	O75081	653 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	DNAJB6	O75190	326 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	MED26	O95402	600 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	C6orf47	O95873	294 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	RNH1	P13489	461 aa	Known RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	CSNK2A2	P19784	350 aa	Predicted RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	NTS	P30990	170 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	GCGR	P47871	477 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	RAB38	P57729	211 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	HBA1	P69905	142 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	LIPE	Q05469	1076 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	TRAP1	Q12931	704 aa	Known RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	TRIM25	Q14258	630 aa	Known RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	C1orf146	Q5VVC0	180 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	OR52E8	Q6IFG1	317 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	BPHL	Q86WA6	291 aa	Predicted RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	SLITRK4	Q8IW52	837 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	RNF148	Q8N7C7	305 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	OR4K14	Q8NGD5	310 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	ZFP28	Q8NHY6	868 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	ADAMTS18	Q8TE60	1221 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	MVB12A	Q96EY5	273 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	CPPED1	Q9BRF8	314 aa	Predicted RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	NDC1	Q9BTX1	674 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	RPF2	Q9H7B2	306 aa	Known RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	GIMAP4	Q9NUV9	329 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	C5AR2	Q9P296	337 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	SUCO	Q9UBS9	1254 aa	Known RBP	11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	PACSIN3	Q9UKS6	424 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	CDC14A	Q9UNH5	594 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	CORO2B	Q9UQ03	480 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	ERVK-11	Q9UQG0	969 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	HCN4	Q9Y3Q4	1203 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	NEUROG3	Q9Y4Z2	214 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF780B	Q9Y6R6	833 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	DNAH14	Q0VDD8	3507 aa		11.11	□□□□□ -0.63
CLN6-223	ENST00000637823	COL27A1	Q8IZC6	1860 aa	Predicted RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	C4orf47	A7E2U8	309 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	CLIC1	O00299	241 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF749	O43361	778 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	MGRN1	O60291	552 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	RDH16	O75452	317 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	PRKRA	O75569	313 aa	Known RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	ERAL1	O75616	437 aa	Known RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	SORBS2	O94875	1100 aa	Known RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	GPX2	P18283	190 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	UQCRC2	P22695	453 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	MPI	P34949	423 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	GSK3B	P49841	420 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	MTPN	P58546	118 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	OLR1	P78380	273 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	E2F1	Q01094	437 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	ZFP36L1	Q07352	338 aa	Known RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	BNIP2	Q12982	314 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	ILK	Q13418	452 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	RIPK1	Q13546	671 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	SELPLG	Q14242	412 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	KPNB1	Q14974	876 aa	Known RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	CEBPE	Q15744	281 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	GTDC1	Q4AE62	458 aa		11.1	□□□□□ -0.63

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