RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 IFNKQ9P0W0 207 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 PDE10AQ9Y233 779 aa13.29□□□□□ -0.28
CLN3-249ENST00000636685 URADA6NGE7 173 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 A8MV72 311 aaPredicted RBP13.28□□□□□ -0.28
CLN3-249ENST00000636685 A8MXE2 369 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 PFDN6O15212 129 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 KCNAB3O43448 404 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 C1QAP02745 245 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 ENO3P13929 434 aaPredicted RBP13.28□□□□□ -0.28
CLN3-249ENST00000636685 RPL22P35268 128 aaKnown RBP13.28□□□□□ -0.28
CLN3-249ENST00000636685 AHRP35869 848 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 RWDD2BP57060 319 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 MPEG1Q2M385 716 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 CENPUQ71F23 418 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 CPNE9Q8IYJ1 553 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 TBC1D19Q8N5T2 526 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 ANKRD53Q8N9V6 530 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 FAM13CQ8NE31 585 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 OR10G3Q8NGC4 313 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 OR14A16Q8NHC5 309 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 ALG3Q92685 438 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 PYCR2Q96C36 320 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 SPACA9Q96E40 222 aaPredicted RBP13.28□□□□□ -0.28
CLN3-249ENST00000636685 ZBED6CLQ96FA7 236 aaPredicted RBP13.28□□□□□ -0.28
CLN3-249ENST00000636685 SNF8Q96H20 258 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 HAUS8Q9BT25 410 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 DOHHQ9BU89 302 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 CXorf56Q9H5V9 222 aa13.28□□□□□ -0.28
CLN3-249ENST00000636685 CNOT11Q9UKZ1 510 aaKnown RBP13.28□□□□□ -0.28
CLN3-249ENST00000636685 CHCHD2Q9Y6H1 151 aaPredicted RBP13.28□□□□□ -0.28
CLN3-249ENST00000636685 SVEP1Q4LDE5 3571 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 C17orf105B2RV13 164 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 PTMAP06454 111 aaKnown RBP13.27□□□□□ -0.29
CLN3-249ENST00000636685 APRTP07741 180 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 TNNI3P19429 210 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 CCND1P24385 295 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 CETN2P41208 172 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 MAGEA1P43355 309 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 CDK9P50750 372 aaKnown RBP13.27□□□□□ -0.29
CLN3-249ENST00000636685 RAB38P57729 211 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 RCAN2Q14206 197 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 BBS9Q3SYG4 887 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 EIPR1Q53HC9 387 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 GCNT2Q8N0V5 402 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 ANKRD9Q96BM1 317 aaPredicted RBP13.27□□□□□ -0.29
CLN3-249ENST00000636685 ZC3HAV1LQ96H79 300 aaKnown RBP13.27□□□□□ -0.29
CLN3-249ENST00000636685 RUNDC3BQ96NL0 473 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 OR4K3Q96R72 315 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 GPR21Q99679 349 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 MED18Q9BUE0 208 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 ALOXE3Q9BYJ1 711 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 PIGMQ9H3S5 423 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 RAB6BQ9NRW1 208 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 ABHD10Q9NUJ1 306 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 CNIH4Q9P003 139 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 KLHL42Q9P2K6 505 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 VTI1BQ9UEU0 232 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 DHRS7Q9Y394 339 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 PRR14LQ5THK1 2151 aa13.27□□□□□ -0.29
CLN3-249ENST00000636685 TCRBV7S2A1N4TA0A589 114 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 GOLGA6L9A6NEM1 432 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 TRIM3O75382 744 aaPredicted RBP13.26□□□□□ -0.29
CLN3-249ENST00000636685 RCBTB2O95199 551 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 ETHE1O95571 254 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 IFNB1P01574 187 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 HPNP05981 417 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 ETS1P14921 441 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 OGNP20774 298 aaKnown RBP13.26□□□□□ -0.29
CLN3-249ENST00000636685 SAT1P21673 171 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 DIO3P55073 304 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 TBL3Q12788 808 aaKnown RBP13.26□□□□□ -0.29
CLN3-249ENST00000636685 CTBP1Q13363 440 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 NHSL2Q5HYW2 709 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 ZNF549Q6P9A3 640 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 ZNF550Q7Z398 422 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 LUZP1Q86V48 1076 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 CILP2Q8IUL8 1156 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 ZNF595Q8IYB9 648 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 TRPV3Q8NET8 790 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 GABPB2Q8TAK5 448 aaPredicted RBP13.26□□□□□ -0.29
CLN3-249ENST00000636685 SLC22A8Q8TCC7 542 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 ZPLD1Q8TCW7 415 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 CD200R1Q8TD46 325 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 ZNF721Q8TF20 911 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 ABTB1Q969K4 478 aaPredicted RBP13.26□□□□□ -0.29
CLN3-249ENST00000636685 ZNF597Q96LX8 424 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 CSF3RQ99062 836 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 TUBA1CQ9BQE3 449 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 RBSNQ9H1K0 784 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 PACSIN3Q9UKS6 424 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 AMFRQ9UKV5 643 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 MEGF8Q7Z7M0 2845 aa13.26□□□□□ -0.29
CLN3-249ENST00000636685 YLPM1P49750 1951 aaKnown RBP13.25□□□□□ -0.29
CLN3-249ENST00000636685 CTNSO60931 367 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 CYP4B1P13584 511 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 REEP5Q00765 189 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 STX4Q12846 297 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 RBBP5Q15291 538 aaKnown RBP13.25□□□□□ -0.29
CLN3-249ENST00000636685 C9orf40Q8IXQ3 194 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 SLC5A11Q8WWX8 675 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms