RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 KRT20P35900 424 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC6A12P48065 614 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 AP1S2P56377 157 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC35A2P78381 396 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 MVKQ03426 396 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 SIGIRRQ6IA17 410 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 CHRDL2Q6WN34 429 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 ERN2Q76MJ5 926 aaKnown RBP13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 CEP68Q76N32 757 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 AMZ2Q86W34 360 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 FYTTD1Q96QD9 318 aaKnown RBP13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 CCDC177Q9NQR7 707 aaPredicted RBP13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 CTDSP2O14595 271 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 ERAL1O75616 437 aaKnown RBP13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 RASGRP1O95267 797 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 GJA4P35212 333 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 HTR2BP41595 481 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 CLDN2P57739 230 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 ELP6Q0PNE2 266 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 PARM1Q6UWI2 310 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 LACC1Q8IV20 430 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 DPP10Q8N608 796 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 FGF14Q92915 247 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 ASB16Q96NS5 453 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 MMP28Q9H239 520 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 MMP27Q9H306 513 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 RNF6Q9Y252 685 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 SNX11Q9Y5W9 270 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 HAT1O14929 419 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 OR1F1O43749 312 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 ALX3O95076 343 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 VIPP01282 170 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 C8orf89P0DMQ9 161 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 CD9P21926 228 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 GRK5P34947 590 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 CDK10Q15131 360 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 SYT6Q5T7P8 510 aaPredicted RBP13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 GPR153Q6NV75 609 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 COMMD6Q7Z4G1 85 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 AMER2Q8N7J2 671 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 TTC29Q8NA56 475 aaPredicted RBP13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 SIPA1Q96FS4 1042 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 REXO5Q96IC2 774 aaKnown RBP13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 C12orf66Q96MD2 445 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 CD93Q9NPY3 652 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 NCKAP1Q9Y2A7 1128 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 MAU2Q9Y6X3 613 aa13.82□□□□□ -0.2
SHROOM1-208ENST00000617339 SLCO2B1O94956 709 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 RB1P06400 928 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 GSTM1P09488 218 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 MAPK1P28482 360 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 VLDLRP98155 873 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 TAP2Q03519 686 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 GRIK2Q13002 908 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 ELAVL3Q14576 367 aaKnown RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 UBXN2BQ14CS0 331 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 ZNF385BQ569K4 471 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 ARMC4Q5T2S8 1044 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 DPPA4Q7L190 304 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 SVOPLQ8N434 492 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 SETD9Q8NE22 299 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 VPS37AQ8NEZ2 397 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 COL26A1Q96A83 441 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 ANKRA2Q9H9E1 313 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 EXOSC4Q9NPD3 245 aaKnown RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 TAS2R9Q9NYW1 312 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 ARNTLO00327 626 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 PRPS2P11908 318 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 PRPS1L1P21108 318 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 GPC1P35052 558 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 TGFBR2P37173 567 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 IDH2P48735 452 aaKnown RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 TIGD6Q17RP2 521 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 ITPRIPL2Q3MIP1 535 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 C1orf53Q5VUE5 145 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 NEK10Q6ZWH5 1172 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 P3H2Q8IVL5 708 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 GLB1L3Q8NCI6 653 aaPredicted RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 UTP15Q8TED0 518 aaKnown RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 HSH2DQ96JZ2 352 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 SLC29A3Q9BZD2 475 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 RANGRFQ9HD47 186 aaPredicted RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 PRSS16Q9NQE7 514 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 TOR4AQ9NXH8 423 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 NUFIP1Q9UHK0 495 aaKnown RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 CFAP54Q96N23 3096 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 FRYLO94915 3013 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 IGLV3-16A0A075B6K0 115 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 HOXB3P14651 431 aaPredicted RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 PRKACBP22694 351 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 PSMA3P25788 255 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 HTR3AP46098 478 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 SNRPD2P62316 118 aaKnown RBP13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 HBA1P69905 142 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 GPLD1P80108 840 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 GAB1Q13480 694 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 GBX1Q14549 363 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 COQ5Q5HYK3 327 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 PJA1Q8NG27 643 aa13.81□□□□□ -0.2
SHROOM1-208ENST00000617339 FCRL4Q96PJ5 515 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms