RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 NOS3P29474 1203 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 SPINT3P49223 89 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TBPL1P62380 186 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 FCHO2Q0JRZ9 810 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 EIF4HQ15056 248 aaKnown RBP12.04□□□□□ -0.48
LIG1-221ENST00000613670 PLEKHS1Q5SXH7 462 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 C9orf64Q5T6V5 341 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 CDC73Q6P1J9 531 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 VASH1Q7L8A9 365 aaPredicted RBP12.04□□□□□ -0.48
LIG1-221ENST00000613670 METTL3Q86U44 580 aaKnown RBP12.04□□□□□ -0.48
LIG1-221ENST00000613670 NOXA1Q86UR1 476 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 OR8H3Q8N146 312 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TM9SF2Q99805 663 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 IL20RAQ9UHF4 553 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 C12orf71A8MTZ7 269 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 INPPL1O15357 1258 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 GPX5O75715 221 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 CD6P30203 668 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 IFNGR2P38484 337 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 MAP2K3P46734 347 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 KCNJ10P78508 379 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 OR2G6Q5TZ20 316 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 MSANTD1Q6ZTZ1 278 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 AMIGO1Q86WK6 493 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 PEX5LQ8IYB4 626 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 RAB42Q8N4Z0 105 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 OR8J1Q8NGP2 316 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 ASB15Q8WXK1 588 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 EFCAB11Q9BUY7 163 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 COQ3Q9NZJ6 369 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TRAV6A0A075B6T7 132 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TRBV4-1A0A0J9YWV2 114 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 A0A1B0GVC2 190 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 A6NIN4 97 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 OR2B3O76000 313 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 NTSP30990 170 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TGFBR2P37173 567 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 ANXA11P50995 505 aaKnown RBP12.04□□□□□ -0.48
LIG1-221ENST00000613670 RAB8AP61006 207 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 FKBP1BP68106 108 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 CBX2Q14781 532 aaPredicted RBP12.04□□□□□ -0.48
LIG1-221ENST00000613670 PAQR6Q6TCH4 344 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TMIGD1Q6UXZ0 262 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TADA1Q96BN2 335 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TMEM19Q96HH6 336 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 TRMT61BQ9BVS5 477 aaKnown RBP12.04□□□□□ -0.48
LIG1-221ENST00000613670 MUTYHQ9UIF7 546 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 CCL27Q9Y4X3 112 aa12.04□□□□□ -0.48
LIG1-221ENST00000613670 OR1F1O43749 312 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 IGLV3-27P01718 113 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 PCSK2P16519 638 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 AVPR1BP47901 424 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 ZDHHC20Q5W0Z9 365 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 C16orf62Q7Z3J2 963 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 CCDC71Q8IV32 467 aaPredicted RBP12.03□□□□□ -0.48
LIG1-221ENST00000613670 ZNF671Q8TAW3 534 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 POF1BQ8WVV4 589 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 JPH3Q8WXH2 748 aaPredicted RBP12.03□□□□□ -0.48
LIG1-221ENST00000613670 SYT17Q9BSW7 474 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 SPEF1Q9Y4P9 236 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 RGPD3A6NKT7 1758 aaPredicted RBP12.03□□□□□ -0.48
LIG1-221ENST00000613670 RGPD4Q7Z3J3 1758 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 MYO9BQ13459 2157 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 M0R3H8 397 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 DSCR3O14972 297 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 IDSP22304 550 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 CTSCP53634 463 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 RBBP4Q09028 425 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 CDC20Q12834 499 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 TMEM115Q12893 351 aaPredicted RBP12.03□□□□□ -0.48
LIG1-221ENST00000613670 E2F2Q14209 437 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 KLHL22Q53GT1 634 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 OR8J2Q8NGG1 315 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 ZNF558Q96NG5 402 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 TMEM184CQ9NVA4 438 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 ENTPD4Q9Y227 616 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 DOCK3Q8IZD9 2030 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 DHFRP00374 187 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 FGBP02675 491 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 OR12D1P0DN82 309 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 CD9P21926 228 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 CPN2P22792 545 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 PDHA2P29803 388 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 SREBF2Q12772 1141 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 SP140Q13342 867 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 ZNF697Q5TEC3 545 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 FAM92BQ6ZTR7 304 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 OLIG3Q7RTU3 272 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 SNAPC3Q92966 411 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 RNF121Q9H920 327 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 ZNF226Q9NYT6 803 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 KLK4Q9Y5K2 254 aa12.03□□□□□ -0.48
LIG1-221ENST00000613670 MIA3Q5JRA6 1907 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 ANHXE9PGG2 379 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 INMT-MINDY4F8WBC2 141 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 PCDH8O95206 1070 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 SRCP12931 536 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 MAGEA2P43356 314 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 HTR3AP46098 478 aa12.02□□□□□ -0.48
LIG1-221ENST00000613670 MRPL19P49406 292 aaKnown RBP12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms