RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ACTN3Q08043 901 aaPredicted RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 GPS2Q13227 327 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 NFATC2Q13469 925 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 SMU1Q2TAY7 513 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 ZNF805Q5CZA5 627 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 TTI2Q6NXR4 508 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 IGFL2Q6UWQ7 119 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 DCDC5Q6ZRR9 648 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 PTCHD4Q6ZW05 846 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 TRAPPC11Q7Z392 1133 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 CLYBLQ8N0X4 340 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 RFWD2Q8NHY2 731 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 MBD3L2Q8NHZ7 208 aaPredicted RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 SLC2A12Q8TD20 617 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 PHF10Q8WUB8 498 aaKnown RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 KRT35Q92764 455 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 RAB7BQ96AH8 199 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 C9orf72Q96LT7 481 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 ANP32EQ9BTT0 268 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 MLPHQ9BV36 600 aaPredicted RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 FUT8Q9BYC5 575 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 KLHL4Q9C0H6 718 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 TKTL2Q9H0I9 626 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 SDCBP2Q9H190 292 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 TNMDQ9H2S6 317 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 SNX15Q9NRS6 342 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 INTS10Q9NVR2 710 aaKnown RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 MPP6Q9NZW5 540 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 ABI3Q9P2A4 366 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 RARRES3Q9UL19 164 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 RRP15Q9Y3B9 282 aaKnown RBP4.09□□□□□ -1.75
LINC00540-201ENST00000611481 L3MBTL1Q9Y468 752 aa4.09□□□□□ -1.75
LINC00540-201ENST00000611481 ABCA1O95477 2261 aa4.09□□□□□ -1.76
LINC00540-201ENST00000611481 HRNRQ86YZ3 2850 aaPredicted RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 IGLV5-39A0A0G2JS06 123 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 hCG_1809904A0A1W2PP81 198 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 A0A1W2PPE2 198 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 A0A1W2PR64 198 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 FAM90A7PA6NKC0 464 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 A6NNC1 897 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 FAM90A22PA8MWA6 464 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 FAM90A12PA8MX19 464 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 FAM90A23PA8MXZ1 464 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ZNHIT1O43257 154 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 LDB2O43679 373 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ZBTB14O43829 449 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 KLK8O60259 260 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 SNAP91O60641 907 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 SMPD2O60906 423 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 OR2C1O95371 312 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 IGLV3-27P01718 113 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 KLK3P07288 261 aaPredicted RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 RAB40ALP0C0E4 278 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 SELLP14151 372 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 CHN1P15882 459 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 MCM3P25205 808 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ACTR1BP42025 376 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 GNPDA1P46926 289 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 CPA2P48052 419 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 PRKAG1P54619 331 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 KIAA1024LP59773 190 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 MYL6P60660 151 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ACTR1AP61163 376 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 UFM1P61960 85 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 HSF1Q00613 529 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 TMEM115Q12893 351 aaPredicted RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 NFE2L1Q14494 772 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 PCLAFQ15004 111 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ZIK1Q3SY52 487 aaPredicted RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 FAM174BQ3ZCQ3 159 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 AGAP7PQ5VUJ5 663 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 KRT79Q5XKE5 535 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 CDC73Q6P1J9 531 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 MSANTD2Q6P1R3 559 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 C22orf39Q6P5X5 142 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 Q6ZPB1 254 aaPredicted RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 LINC00696Q6ZRV3 163 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 CRYBG2Q8N1P7 616 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 DPP10Q8N608 796 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 OR52K2Q8NGK3 314 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 LILRB4Q8NHJ6 448 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 SETD6Q8TBK2 473 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 SLC37A2Q8TED4 501 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ASB5Q8WWX0 329 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 HSPH1Q92598 858 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ARHGEF26Q96DR7 871 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ZMYND19Q96E35 227 aaPredicted RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ALG14Q96F25 216 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 PGAM5Q96HS1 289 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 REXO5Q96IC2 774 aaKnown RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 AGAP4Q96P64 663 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 TGM7Q96PF1 710 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ABHD1Q96SE0 405 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 FIZ1Q96SL8 496 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ATP6V0BQ99437 205 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 PLIN2Q99541 437 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 PIP5K1AQ99755 562 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 TUBB6Q9BUF5 446 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 DUSP16Q9BY84 665 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 NLNQ9BYT8 704 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms