RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ATP6AP2A0A1C7CYW4 349 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 UBXN8O00124 270 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 RAD51CO43502 376 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 ATP6AP2O75787 350 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 EPORP19235 508 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 SPRP35270 261 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 DNASE1L1P49184 302 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 RNF4P78317 190 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 GXYLT1Q4G148 440 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 MED27Q6P2C8 311 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 RTL4Q6ZR62 310 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 FAM47EQ6ZV65 393 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 GPALPP1Q8IXQ4 340 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 ZNF473Q8WTR7 871 aaKnown RBP16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 ASB5Q8WWX0 329 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 SCYL1Q96KG9 808 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 SPOCK3Q9BQ16 436 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 TBCDQ9BTW9 1192 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 MS4A8Q9BY19 250 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 TTTY12Q9BZ98 90 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 OR51B5Q9H339 312 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 LYRM4Q9HD34 91 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 PNPLA3Q9NST1 481 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 WHRNQ9P202 907 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 COPS7AQ9UBW8 275 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 ANGPTL3Q9Y5C1 460 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 LIPGQ9Y5X9 500 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 CCDC168Q8NDH2 2452 aa16.3■□□□□ 0.2
SHKBP1-223ENST00000600552 TACC2O95359 2948 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 FAM187AA6NFU0 413 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 FAM159BA6NKW6 160 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 ETHE1O95571 254 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 P04436 131 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 CNR1P21554 472 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 MAGEA5P43359 124 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 RAP1GDS1P52306 607 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 PLTPP55058 493 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 NUP107P57740 925 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 GPX6P59796 221 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 ASPHQ12797 758 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 SLAMF1Q13291 335 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 SERTAD2Q14140 314 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 KBTBD12Q3ZCT8 623 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 CDKL4Q5MAI5 379 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 GRTP1Q5TC63 336 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 CHSY3Q70JA7 882 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 LRRC70Q7Z2Q7 622 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 TBC1D1Q86TI0 1168 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 SLC22A16Q86VW1 577 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 TEX9Q8N6V9 391 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 PDPRQ8NCN5 879 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 SRFBP1Q8NEF9 429 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 OR5L2Q8NGL0 311 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 STAG3L4Q8TBR4 150 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 UBE2E3Q969T4 207 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 WDR34Q96EX3 536 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 DGAT2Q96PD7 388 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 FAM173AQ9BQD7 235 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 LDAHQ9H6V9 325 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 KCNJ16Q9NPI9 418 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 NUDT4Q9NZJ9 180 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 OPTCQ9UBM4 332 aa16.29■□□□□ 0.2
SHKBP1-223ENST00000600552 FGF17O60258 216 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 ZNF354AO60765 605 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 PRKRAO75569 313 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 COX7A2P14406 83 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 HIST1H1TP22492 207 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 CHRNB4P30926 498 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 ILF2Q12905 390 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 DLG1Q12959 904 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 EMC4Q5J8M3 183 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 OPN5Q6U736 354 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 GK5Q6ZS86 529 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 MAATS1Q7Z4T9 603 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 CDH24Q86UP0 819 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 TMEM251Q8N6I4 163 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 LILRB4Q8NHJ6 448 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 ANKRD9Q96BM1 317 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 UBXN10Q96LJ8 280 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 SMC6Q96SB8 1091 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 ENKD1Q9H0I2 346 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 NMRAL1Q9HBL8 299 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 SACM1LQ9NTJ5 587 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 GRHL1Q9NZI5 618 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 RNF14Q9UBS8 474 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 ACAD8Q9UKU7 415 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 F8P00451 2351 aa16.28■□□□□ 0.2
SHKBP1-223ENST00000600552 K7EPI3 171 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 EIF3HO15372 352 aaKnown RBP eCLIP16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 CELA3AP09093 270 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 CCL3P10147 92 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 PIGAP37287 484 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 TBCCQ15814 346 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 TMEM35AQ53FP2 167 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 KHDRBS2Q5VWX1 349 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 OR4C11Q6IEV9 310 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 DGAT2L6Q6ZPD8 337 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 ISCA2Q86U28 154 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 SPATA4Q8NEY3 305 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 OR7G3Q8NG95 312 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms