RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 SERPINB9P50453 376 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 RAP1GDS1P52306 607 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 HK2P52789 917 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 SLAMF1Q13291 335 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 RCN2Q14257 317 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 C3AR1Q16581 482 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 CPSF6Q16630 551 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIG1-212ENST00000596549 AP5B1Q2VPB7 878 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 GLE1Q53GS7 698 aaKnown RBP12.13□□□□□ -0.47
LIG1-212ENST00000596549 C18orf63Q68DL7 685 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 MRM1Q6IN84 353 aaKnown RBP12.13□□□□□ -0.47
LIG1-212ENST00000596549 DGAT2L6Q6ZPD8 337 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 CHSY3Q70JA7 882 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 RPS27LQ71UM5 84 aaKnown RBP12.13□□□□□ -0.47
LIG1-212ENST00000596549 FGD2Q7Z6J4 655 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 OR4N5Q8IXE1 308 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 TMEM132CQ8N3T6 1108 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 ZCCHC7Q8N3Z6 543 aaKnown RBP12.13□□□□□ -0.47
LIG1-212ENST00000596549 FAM98AQ8NCA5 519 aaKnown RBP12.13□□□□□ -0.47
LIG1-212ENST00000596549 OR14A16Q8NHC5 309 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 SLC2A12Q8TD20 617 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 ITLN2Q8WWU7 325 aaPredicted RBP12.13□□□□□ -0.47
LIG1-212ENST00000596549 PHF21BQ96EK2 531 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 TSPYL1Q9H0U9 437 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 ADGRE2Q9UHX3 823 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 NFU1Q9UMS0 254 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 NPIPA1Q9UND3 350 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 ZNF835Q9Y2P0 537 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 ATG4BQ9Y4P1 393 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 PCDHGA11Q9Y5H2 935 aa12.13□□□□□ -0.47
LIG1-212ENST00000596549 A0A087WUV0 522 aaPredicted RBP12.12□□□□□ -0.47
LIG1-212ENST00000596549 C17orf105B2RV13 164 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 STX16-NPEPL1H3BU86 382 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 STX16O14662 325 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 OR2J2O76002 312 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 ZFAND5O76080 213 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 BSGP35613 385 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 RFC3P40938 356 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 SOX3P41225 446 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 NEK2P51955 445 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 GPR85P60893 370 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 ADORA2A-AS1P86434 159 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 FOLH1Q04609 750 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 GTF3C1Q12789 2109 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 STX4Q12846 297 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 SERTAD2Q14140 314 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 TSNAXIP1Q2TAA8 658 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 METTL2BQ6P1Q9 378 aaKnown RBP12.12□□□□□ -0.47
LIG1-212ENST00000596549 Q6ZPB1 254 aaPredicted RBP12.12□□□□□ -0.47
LIG1-212ENST00000596549 NCCRP1Q6ZVX7 275 aaPredicted RBP12.12□□□□□ -0.47
LIG1-212ENST00000596549 TAOK1Q7L7X3 1001 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 SULF2Q8IWU5 870 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 TMEM151AQ8N4L1 468 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 TMEM156Q8N614 296 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 LRRN4CLQ8ND94 238 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 MORN4Q8NDC4 146 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 ZNF721Q8TF20 911 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 DAZLQ92904 295 aaKnown RBP12.12□□□□□ -0.47
LIG1-212ENST00000596549 RGMAQ96B86 450 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 RASL10BQ96S79 203 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 CCDC77Q9BR77 488 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 OR8D2Q9GZM6 311 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 NOL11Q9H8H0 719 aaKnown RBP12.12□□□□□ -0.47
LIG1-212ENST00000596549 DEPPQ9NTK1 212 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 MYOTQ9UBF9 498 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 KLF13Q9Y2Y9 288 aaPredicted RBP12.12□□□□□ -0.47
LIG1-212ENST00000596549 TNPO3Q9Y5L0 923 aaKnown RBP12.12□□□□□ -0.47
LIG1-212ENST00000596549 CLCA3PQ9Y6N3 262 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 SPACA6W5XKT8 324 aa12.12□□□□□ -0.47
LIG1-212ENST00000596549 MYO7BQ6PIF6 2116 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 A0A0G2JMM0 328 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 EXOC1LA0A1B0GW35 172 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 A0A1W2PPB8 328 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 A0A1W2PRS3 328 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 PINLYPA6NC86 204 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 WASHC1A8K0Z3 465 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 A8MT66 165 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 KIR3DP1A8MWS1 328 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 KIF2AO00139 706 aaPredicted RBP12.11□□□□□ -0.47
LIG1-212ENST00000596549 HRKO00198 91 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 WWP2O00308 870 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 CCL21O00585 134 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 KRT38O76015 456 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 OR6B1O95007 311 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 CLDN9O95484 217 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 IGKV3-11P04433 115 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 ABHD2P08910 425 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 RBP1P09455 135 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 CNTFP26441 200 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 PTGER1P34995 402 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 STT3AP46977 705 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 SSR4P51571 173 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 NR0B1P51843 470 aaKnown RBP12.11□□□□□ -0.47
LIG1-212ENST00000596549 ARFIP1P53367 373 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 RBPJQ06330 500 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 CUL3Q13618 768 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 HSDL2Q6YN16 418 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 GPR180Q86V85 440 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 C9orf40Q8IXQ3 194 aa12.11□□□□□ -0.47
LIG1-212ENST00000596549 GSPT2Q8IYD1 628 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms