RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 EGFL8Q99944 293 aa9.2□□□□□ -0.94
LIG1-209ENST00000596104 SH3GL2Q99962 352 aa9.2□□□□□ -0.94
LIG1-209ENST00000596104 PITHD1Q9GZP4 211 aaPredicted RBP9.2□□□□□ -0.94
LIG1-209ENST00000596104 REXO4Q9GZR2 422 aaKnown RBP9.2□□□□□ -0.94
LIG1-209ENST00000596104 ZNF703Q9H7S9 590 aaPredicted RBP9.2□□□□□ -0.94
LIG1-209ENST00000596104 PRDM7Q9NQW5 492 aa9.2□□□□□ -0.94
LIG1-209ENST00000596104 PCDHGB3Q9Y5G1 929 aa9.2□□□□□ -0.94
LIG1-209ENST00000596104 MAP1AP78559 2803 aaPredicted RBP9.2□□□□□ -0.94
LIG1-209ENST00000596104 PHF3Q92576 2039 aaKnown RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 ANKDD1BA6NHY2 528 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 C17orf105B2RV13 164 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 DNALI1O14645 258 aaPredicted RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 LDB3O75112 727 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 IGKV3-11P04433 115 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 RFPL3SP0C7P2 107 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 DRD2P14416 443 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 CD22P20273 847 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 PEX19P40855 299 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 TAS2R39P59534 338 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ASPHQ12797 758 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 STX4Q12846 297 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 SERTAD2Q14140 314 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 RCN2Q14257 317 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ZNF460Q14592 562 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 FLYWCH1Q4VC44 716 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 STEAP4Q687X5 459 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 POMZP3Q6PJE2 187 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 PAMR1Q6UXH9 720 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ZNF793Q6ZN11 406 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 UBE3DQ7Z6J8 389 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ADAMTSL2Q86TH1 951 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ZC3HC1Q86WB0 502 aaKnown RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 ULK2Q8IYT8 1036 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 KRT78Q8N1N4 520 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 LRRC25Q8N386 305 aaPredicted RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 NKAPQ8N5F7 415 aaKnown RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 NAXEQ8NCW5 288 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 NUBPLQ8TB37 319 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 PAQR8Q8TEZ7 354 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ZNF721Q8TF20 911 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 FAM222BQ8WU58 562 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 RNASE6Q93091 150 aaKnown RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 KIAA1191Q96A73 305 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ANKRD9Q96BM1 317 aaPredicted RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 PBKQ96KB5 322 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 TMEM79Q9BSE2 394 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 SLC6A15Q9H2J7 730 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 EHD1Q9H4M9 534 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 LDAHQ9H6V9 325 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 PROK2Q9HC23 129 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 LYRM4Q9HD34 91 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ACKR4Q9NPB9 350 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 PPANQ9NQ55 473 aaKnown RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 DMRT3Q9NQL9 472 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 TRMT1Q9NXH9 659 aaKnown RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 ALKBH4Q9NXW9 302 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 GPRC5BQ9NZH0 403 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 ZNF490Q9ULM2 529 aaPredicted RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 CBLCQ9ULV8 474 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 PSAT1Q9Y617 370 aa9.19□□□□□ -0.94
LIG1-209ENST00000596104 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.19□□□□□ -0.94
LIG1-209ENST00000596104 HSPB2A8KAH6 182 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 KDM4EB2RXH2 506 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 PGRMC1O00264 195 aaKnown RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 TAPBPO15533 448 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 TNNI3P19429 210 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 FLNAP21333 2647 aaKnown RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 IVDP26440 423 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 UQCRC1P31930 480 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 CEACAM8P31997 349 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 HPDP32754 393 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 GGT5P36269 586 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 ELK3P41970 407 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 ASCL1P50553 236 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 DGKQP52824 942 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 IGLV3-21P80748 117 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 ID2Q02363 134 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 FRG1Q14331 258 aaKnown RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 DAZAP2Q15038 168 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 HSPB2Q16082 182 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 ACSF3Q4G176 576 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 SLC22A10Q63ZE4 541 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 CAMKMTQ7Z624 323 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 C9orf40Q8IXQ3 194 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 FBXW8Q8N3Y1 598 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 GOT1L1Q8NHS2 421 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 NEIL3Q8TAT5 605 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 GRK7Q8WTQ7 553 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 SPACA9Q96E40 222 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 WDR34Q96EX3 536 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 CFAP36Q96G28 342 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 SENP5Q96HI0 755 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 DNHD1Q96M86 4753 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 F2RL3Q96RI0 385 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 NAP1L3Q99457 506 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 MAPKAP1Q9BPZ7 522 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 CAPS2Q9BXY5 557 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 EXO5Q9H790 373 aa9.18□□□□□ -0.94
LIG1-209ENST00000596104 COPS7BQ9H9Q2 264 aaPredicted RBP9.18□□□□□ -0.94
LIG1-209ENST00000596104 ZFP64Q9NPA5 681 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms