RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CENPLQ8N0S6 344 aaPredicted RBP13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 SLC15A4Q8N697 577 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 PSD4Q8NDX1 1056 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 FAM57AQ8TBR7 257 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 ISL2Q96A47 359 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 RGMAQ96B86 450 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 ZDHHC11Q9H8X9 412 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 ZDHHC18Q9NUE0 388 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 PHF11Q9UIL8 331 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 FBXW2Q9UKT8 454 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 TMCO1Q9UM00 188 aa13.47□□□□□ -0.25
SMARCE1-216ENST00000580419 A8MVJ9 347 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 TFECO14948 347 aaPredicted RBP13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 DYRK3O43781 588 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 KLHL2O95198 593 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 IGKV3-11P04433 115 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 C2P06681 752 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 TLX1P31314 330 aaPredicted RBP13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 PHBP35232 272 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 PTGS2P35354 604 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 MSH2P43246 934 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 STT3AP46977 705 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 RNF4P78317 190 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 PHEXP78562 749 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 C2orf54Q08AI8 447 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 BMPR2Q13873 1038 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 CMPK2Q5EBM0 449 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 TMEM211Q6ICI0 200 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 OR4C11Q6IEV9 310 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 KLC3Q6P597 504 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 OPN5Q6U736 354 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 GK5Q6ZS86 529 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 L3MBTL4Q8NA19 623 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 FAM47BQ8NA70 645 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 AGAP11Q8TF27 550 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 ANKRD9Q96BM1 317 aaPredicted RBP13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 RASL10BQ96S79 203 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 CSF3RQ99062 836 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 DDX31Q9H8H2 851 aaKnown RBP13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 HPF1Q9NWY4 346 aa13.46□□□□□ -0.25
SMARCE1-216ENST00000580419 SPG11Q96JI7 2443 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 CSMD2Q7Z408 3487 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ANKRD17O75179 2603 aaKnown RBP13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 POLQO75417 2590 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 A0A0G2JN53 185 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 A0A1B0GVC2 190 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 HMX2A2RU54 273 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 A8MUA0 341 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 SUPT3HB4E1H0 165 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ACOT7O00154 380 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 SUPT3HO75486 399 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 OR2J2O76002 312 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 GLSO94925 669 aaPredicted RBP13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 SEMA3DO95025 777 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 IGHG3P01860 377 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 COL6A2P12110 1019 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 HK2P52789 917 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 SLMAPQ14BN4 828 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 SPRED3Q2MJR0 410 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 MRM1Q6IN84 353 aaKnown RBP13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ADNP2Q6IQ32 1131 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 RTL4Q6ZR62 310 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 MDGA2Q7Z553 956 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 FGD2Q7Z6J4 655 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 CMC1Q7Z7K0 106 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 SLC22A16Q86VW1 577 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 MCEMP1Q8IX19 187 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ST13P4Q8IZP2 240 aaPredicted RBP13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 HUS1BQ8NHY5 278 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 SLC2A12Q8TD20 617 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ASB15Q8WXK1 588 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ESAMQ96AP7 390 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 MTFMTQ96DP5 389 aaKnown RBP13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 C14orf79Q96F83 325 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 FBXL20Q96IG2 436 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 GPR78Q96P69 363 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 PHF12Q96QT6 1004 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 MAPKAP1Q9BPZ7 522 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 FAM173AQ9BQD7 235 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 UNKQ9C0B0 810 aaKnown RBP13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ENKD1Q9H0I2 346 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 TP63Q9H3D4 680 aaPredicted RBP13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ACSS3Q9H6R3 686 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 DMRT3Q9NQL9 472 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 LYARQ9NX58 379 aaKnown RBP13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 COPS7AQ9UBW8 275 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 ERVK-11Q9UQG0 969 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 PCDHGB3Q9Y5G1 929 aa13.45□□□□□ -0.26
SMARCE1-216ENST00000580419 HCFC1P51610 2035 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 OR6C76A6NM76 312 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 C17orf105B2RV13 164 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 UBXN8O00124 270 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 IFNA16P05015 189 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 HOXD4P09016 255 aaPredicted RBP13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 PRF1P14222 555 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 COX6B1P14854 86 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 CNR1P21554 472 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 CNTFP26441 200 aa13.44□□□□□ -0.26
SMARCE1-216ENST00000580419 SSTR2P30874 369 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms