RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PYGBP11216 843 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 CD46P15529 392 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 ATP5F1P24539 256 aaPredicted RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 TPP2P29144 1249 aaPredicted RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 BUD31P41223 144 aaPredicted RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 NEK2P51955 445 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 TNFRSF17Q02223 184 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 IFT88Q13099 833 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 TTC19Q6DKK2 380 aaPredicted RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 NUDT13Q86X67 352 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 SLC22A9Q8IVM8 553 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 TMEM178AQ8NBL3 297 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 OR4F6Q8NGB9 312 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 PRR7Q8TB68 274 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 UBLCP1Q8WVY7 318 aaPredicted RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 NR4A3Q92570 626 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 NCLNQ969V3 563 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 ANKRD9Q96BM1 317 aaPredicted RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 SIGLEC12Q96PQ1 595 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 SORBS1Q9BX66 1292 aaKnown RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 RPF2Q9H7B2 306 aaKnown RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 AHSPQ9NZD4 102 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 LRFN1Q9P244 771 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 TBK1Q9UHD2 729 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 TRPS1Q9UHF7 1281 aa13.84□□□□□ -0.19
SS18-212ENST00000579061 ZNF223Q9UK11 482 aaPredicted RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 USP9YO00507 2555 aaPredicted RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 SPTAN1Q13813 2472 aaKnown RBP13.84□□□□□ -0.19
SS18-212ENST00000579061 PROM1O43490 865 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 DLX3O60479 287 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 GLRA3O75311 464 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 EEDO75530 441 aaKnown RBP13.83□□□□□ -0.2
SS18-212ENST00000579061 NEURL1O76050 574 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 ZFAND5O76080 213 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 IMPDH1P20839 514 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 HSD17B3P37058 310 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 CYB561P49447 251 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 HLCSP50747 726 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 TDGF1P3P51864 188 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 HNRNPH2P55795 449 aaKnown RBP13.83□□□□□ -0.2
SS18-212ENST00000579061 OC90Q02509 493 aaPredicted RBP13.83□□□□□ -0.2
SS18-212ENST00000579061 CLCQ05315 142 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 ZNF678Q5SXM1 525 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 CYP20A1Q6UW02 462 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 OR8K3Q8NH51 312 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 SSC4DQ8WTU2 575 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 PTPMT1Q8WUK0 201 aaPredicted RBP13.83□□□□□ -0.2
SS18-212ENST00000579061 C5orf34Q96MH7 638 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 ELOVL6Q9H5J4 265 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 ANKZF1Q9H8Y5 726 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 BRF2Q9HAW0 419 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 ADAM29Q9UKF5 820 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 SNX6Q9UNH7 406 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 STK38LQ9Y2H1 464 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 ATG4BQ9Y4P1 393 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 ASB4Q9Y574 426 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 ICE1Q9Y2F5 2266 aa13.83□□□□□ -0.2
SS18-212ENST00000579061 DIDO1Q9BTC0 2240 aaKnown RBP13.82□□□□□ -0.2
SS18-212ENST00000579061 ASPDHA6ND91 283 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 GOLGA8RI6L899 631 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 FGF17O60258 216 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 SUPT7LO94864 414 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 DDAH2O95865 285 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 SP1P08047 785 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 FAM58BPP0C7Q3 252 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 COX7A2P14406 83 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 STT3AP46977 705 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 PRKAA2P54646 552 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 CDH13P55290 713 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 NAA20P61599 178 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 UNC50Q53HI1 259 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 ZNF468Q5VIY5 522 aaPredicted RBP13.82□□□□□ -0.2
SS18-212ENST00000579061 SPINK14Q6IE38 97 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 SLC25A25Q6KCM7 469 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 LETMD1Q6P1Q0 360 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 SH2D5Q6ZV89 423 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 RPS27LQ71UM5 84 aaKnown RBP13.82□□□□□ -0.2
SS18-212ENST00000579061 PAGE2Q7Z2X7 111 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 FAM98AQ8NCA5 519 aaKnown RBP13.82□□□□□ -0.2
SS18-212ENST00000579061 MTFMTQ96DP5 389 aaKnown RBP13.82□□□□□ -0.2
SS18-212ENST00000579061 CCDC126Q96EE4 140 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 L3HYPDHQ96EM0 354 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 PSMG3-AS1Q96PY0 264 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 ZNF382Q96SR6 550 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 PELOQ9BRX2 385 aaKnown RBP13.82□□□□□ -0.2
SS18-212ENST00000579061 WDR41Q9HAD4 459 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 NMRK1Q9NWW6 199 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 ANKRD10Q9NXR5 420 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 ZNF225Q9UK10 706 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 SLC5A6Q9Y289 635 aa13.82□□□□□ -0.2
SS18-212ENST00000579061 YARS2Q9Y2Z4 477 aaKnown RBP13.82□□□□□ -0.2
SS18-212ENST00000579061 A0A1B0GTL3 188 aa13.81□□□□□ -0.2
SS18-212ENST00000579061 A0A1W2PPM1 405 aa13.81□□□□□ -0.2
SS18-212ENST00000579061 C17orf105B2RV13 164 aa13.81□□□□□ -0.2
SS18-212ENST00000579061 PPP6CO00743 305 aa13.81□□□□□ -0.2
SS18-212ENST00000579061 DYRK3O43781 588 aa13.81□□□□□ -0.2
SS18-212ENST00000579061 TMPRSS11DO60235 418 aa13.81□□□□□ -0.2
SS18-212ENST00000579061 ZNF500O60304 480 aaPredicted RBP13.81□□□□□ -0.2
SS18-212ENST00000579061 CDH16O75309 829 aa13.81□□□□□ -0.2
SS18-212ENST00000579061 SEMA7AO75326 666 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms