RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 APBB3O95704 486 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 IGHV3-13P01766 116 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 MT-ND3P03897 115 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 ZFYP08048 801 aaPredicted RBP4.27□□□□□ -1.73
NUP88-213ENST00000576862 SSTR1P30872 391 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 CAPZA1P52907 286 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 SLC8A3P57103 927 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 TFCP2Q12800 502 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 GALNT17Q6IS24 598 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 SPATA19Q7Z5L4 167 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 TIGD4Q8IY51 512 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 AMER3Q8N944 861 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 NCOA7Q8NI08 942 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 EXOC6Q8TAG9 804 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 GAL3ST4Q96RP7 486 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 INTS14Q96SY0 518 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 ALKBH7Q9BT30 221 aaPredicted RBP4.27□□□□□ -1.73
NUP88-213ENST00000576862 GNB4Q9HAV0 340 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 BAIAP2L1Q9UHR4 511 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 RUVBL2Q9Y230 463 aaKnown RBP4.27□□□□□ -1.73
NUP88-213ENST00000576862 ZNF510Q9Y2H8 683 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 ZFP37Q9Y6Q3 630 aaPredicted RBP4.27□□□□□ -1.73
NUP88-213ENST00000576862 COLEC10Q9Y6Z7 277 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 NRKQ7Z2Y5 1582 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 SBNO1A3KN83 1393 aa4.27□□□□□ -1.73
NUP88-213ENST00000576862 FANCIQ9NVI1 1328 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 C1orf167Q5SNV9 1468 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 CCDC69A6NI79 296 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 E5RGE8 158 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 H0Y626 953 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 SIX3O95343 332 aaPredicted RBP4.26□□□□□ -1.73
NUP88-213ENST00000576862 SLC4A1P02730 911 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 ANKRD34CP0C6C1 535 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 SCG2P13521 617 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 IFNAR1P17181 557 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 STIP1P31948 543 aaKnown RBP4.26□□□□□ -1.73
NUP88-213ENST00000576862 ETV5P41161 510 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 RIPK4P57078 832 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 CDO1Q16878 200 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 SPINK14Q6IE38 97 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 ZNF770Q6IQ21 691 aaPredicted RBP4.26□□□□□ -1.73
NUP88-213ENST00000576862 COX8CQ7Z4L0 72 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 SPATA21Q7Z572 469 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 FAM131BQ86XD5 332 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 CROCCP3Q8IVE0 287 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 ZC3H3Q8IXZ2 948 aaKnown RBP4.26□□□□□ -1.73
NUP88-213ENST00000576862 ZNF619Q8N2I2 560 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 ABHD12Q8N2K0 398 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 NAT8LQ8N9F0 302 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 RASL10AQ92737 203 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 RBM18Q96H35 190 aaKnown RBP4.26□□□□□ -1.73
NUP88-213ENST00000576862 LURAP1Q96LR2 239 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 AK8Q96MA6 479 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 FOXN4Q96NZ1 517 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 FERMT1Q9BQL6 677 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 THUMPD2Q9BTF0 503 aaKnown RBP4.26□□□□□ -1.73
NUP88-213ENST00000576862 C5orf66Q9H5L9 145 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 RPAP3Q9H6T3 665 aaPredicted RBP4.26□□□□□ -1.73
NUP88-213ENST00000576862 C10orf88Q9H8K7 445 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 SLC12A6Q9UHW9 1150 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 NSG2Q9Y328 171 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 FLT4P35916 1363 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 LRRC7Q96NW7 1537 aa4.26□□□□□ -1.73
NUP88-213ENST00000576862 hCG_38984A0A1B0GV85 526 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 A8MXK9 166 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 NPIPA3F8WFD2 350 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 RNF103O00237 685 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 CASQ2O14958 399 aaPredicted RBP4.25□□□□□ -1.73
NUP88-213ENST00000576862 NEMFO60524 1076 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 LRCH4O75427 683 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 C9P02748 559 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 MT-ND2P03891 347 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 DLATP10515 647 aaKnown RBP4.25□□□□□ -1.73
NUP88-213ENST00000576862 AOC1P19801 751 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 C4BPBP20851 252 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 IL4RP24394 825 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 CCNCP24863 283 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 GP5P40197 560 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 BTG1P62324 171 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 CD300CQ08708 224 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 ZNF542PQ5EBM4 170 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 SPANXN4Q5MJ08 99 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 FAM46CQ5VWP2 391 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 C11orf88Q6PI97 169 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 MON2Q7Z3U7 1717 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 RPLP0P6Q8NHW5 317 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 FBXO30Q8TB52 745 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 SETD6Q8TBK2 473 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 ZNF75CPQ92670 426 aaPredicted RBP4.25□□□□□ -1.73
NUP88-213ENST00000576862 RIT1Q92963 219 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 EXOC4Q96A65 974 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 PDLIM5Q96HC4 596 aaKnown RBP4.25□□□□□ -1.73
NUP88-213ENST00000576862 PNNQ9H307 717 aaKnown RBP4.25□□□□□ -1.73
NUP88-213ENST00000576862 EXOC1Q9NV70 894 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 NLGN3Q9NZ94 848 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 ZMAT5Q9UDW3 170 aaKnown RBP4.25□□□□□ -1.73
NUP88-213ENST00000576862 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.25□□□□□ -1.73
NUP88-213ENST00000576862 NCOA3Q9Y6Q9 1424 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 ARHGEF10O15013 1369 aa4.25□□□□□ -1.73
NUP88-213ENST00000576862 FMN2Q9NZ56 1722 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms