RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DEFB119Q8N690 84 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PACRGLQ8N7B6 248 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 C19orf47Q8N9M1 422 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 FAM181AQ8N9Y4 354 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 C11orf65Q8NCR3 313 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 HIPK4Q8NE63 616 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 OR52N2Q8NGI0 321 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 OR10A6Q8NH74 314 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 UTP15Q8TED0 518 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 ZFP90Q8TF47 636 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 RASSF5Q8WWW0 418 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PYDC1Q8WXC3 89 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 LZICQ8WZA0 190 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 N4BP2L2Q92802 583 aaPredicted RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 TANKQ92844 425 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 NAT6Q93015 286 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 GFM2Q969S9 779 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 FAM162AQ96A26 154 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PPWD1Q96BP3 646 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 SMIM10Q96HG1 83 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 LOXL4Q96JB6 756 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 TRAPPC9Q96Q05 1148 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 BBS4Q96RK4 519 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SLC39A3Q9BRY0 314 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 TACO1Q9BSH4 297 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 BDH2Q9BUT1 245 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SPATA5L1Q9BVQ7 753 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 ZNF717Q9BY31 904 aaPredicted RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 PCDHAC1Q9H158 963 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 TMEM38AQ9H6F2 299 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PDE7BQ9NP56 450 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SLC35C2Q9NQQ7 365 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 ADPRHL2Q9NX46 363 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SLC25A37Q9NYZ2 338 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 SLAMF8Q9P0V8 285 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 LRIT1Q9P2V4 623 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PILRBQ9UKJ0 227 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 BAG5Q9UL15 447 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 PLCL2Q9UPR0 1127 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 MRPS33Q9Y291 106 aaKnown RBP7.56□□□□□ -1.2
VPS39-213ENST00000570062 ASB4Q9Y574 426 aa7.56□□□□□ -1.2
VPS39-213ENST00000570062 REV3LO60673 3130 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 A0A0J9YVX5 310 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 A0A1B0GTQ1 180 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 TMEM221A6NGB7 291 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 DUXAA6NLW8 204 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 H0YGG7 62 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 M0R296 226 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 CXCR6O00574 342 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 PPM1DO15297 605 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 PROM1O43490 865 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 SH3BP5O60239 455 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 DEAF1O75398 565 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 ZBTB11O95625 1053 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 CER1O95813 267 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 TBX6O95947 436 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 CAPNS1P04632 268 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 NR2F6P10588 404 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 TDGF1P13385 188 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 HOXB9P17482 250 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 ALDH9A1P49189 494 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 ARL4DP49703 201 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 ARHGDIAP52565 204 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 ARF3P61204 181 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 BTN3A2P78410 334 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 MRPS22P82650 360 aaKnown RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 PRR5P85299 388 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 HYAL2Q12891 473 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 GK3PQ14409 553 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 NR0B2Q15466 257 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 RGNQ15493 299 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 CEBPEQ15744 281 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 INAVAQ3KP66 663 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 PLK5Q496M5 336 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 NDUFAF5Q5TEU4 345 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 OR52E8Q6IFG1 317 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 ADNP2Q6IQ32 1131 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 TMEM214Q6NUQ4 689 aaKnown RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 SLC48A1Q6P1K1 146 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 WDR74Q6RFH5 385 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 VN1R4Q7Z5H5 301 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 MCATQ8IVS2 390 aaKnown RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 CSNK1A1LQ8N752 337 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 DTWD2Q8NBA8 298 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 ICA1LQ8NDH6 482 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 OR56A1Q8NGH5 318 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 SFXN5Q8TD22 340 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 DNAJC9Q8WXX5 260 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 COL26A1Q96A83 441 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 FKBP10Q96AY3 582 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 MVB12AQ96EY5 273 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 CENPNQ96H22 339 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 BTBD9Q96Q07 612 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 TEFMQ96QE5 360 aaKnown RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 ZNF184Q99676 751 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 SLC35A5Q9BS91 424 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 TRIM45Q9H8W5 580 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 ANKHQ9HCJ1 492 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 DCAF13Q9NV06 445 aaKnown RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 NKX1-2Q9UD57 310 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms