RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CHRFAM7AQ494W8 412 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RNF212Q495C1 297 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PAN3Q58A45 887 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 PABPC1L2AQ5JQF8 200 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PCID2Q5JVF3 399 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CLLU1Q5K131 121 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 LDLRAP1Q5SW96 308 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SUMO4Q6EEV6 95 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SLC25A25Q6KCM7 469 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 HEPHL1Q6MZM0 1159 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RPL13AP3Q6NVV1 102 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 FBXO46Q6PJ61 603 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 ZNF788Q6ZQV5 615 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TMEM26Q6ZUK4 368 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CENPUQ71F23 418 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SLC24A5Q71RS6 500 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SLC29A4Q7RTT9 530 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MAVSQ7Z434 540 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TFAP2DQ7Z6R9 452 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 DTX2Q86UW9 622 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TRABD2AQ86V40 505 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TMC8Q8IU68 726 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 UNC5CLQ8IV45 518 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ARID3BQ8IVW6 561 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 ADHFE1Q8IWW8 467 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SLC35F3Q8IY50 421 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PRSS58Q8IYP2 241 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 UBQLNLQ8IYU4 475 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SVOPLQ8N434 492 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 EMC1Q8N766 993 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PACRGLQ8N7B6 248 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TMEM35BQ8NCS4 154 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 DMBX1Q8NFW5 382 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 OR10T2Q8NGX3 314 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 OR2L8Q8NGY9 312 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 NTN5Q8WTR8 489 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 TRAPPC12Q8WVT3 735 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ING5Q8WYH8 240 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 NR4A3Q92570 626 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RBPMSQ93062 196 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 DCPSQ96C86 337 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 MTERF3Q96E29 417 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TCEAL4Q96EI5 215 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SIPA1Q96FS4 1042 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MASTLQ96GX5 879 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PIWIL1Q96J94 861 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 FAM84BQ96KN1 310 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 C10orf90Q96M02 699 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 KCNA7Q96RP8 456 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PFDN5Q99471 154 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 IL12RB2Q99665 862 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ZNF559Q9BR84 538 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TTYH2Q9BSA4 534 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 DPCDQ9BVM2 203 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 OSBPL11Q9BXB4 747 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TEX12Q9BXU0 123 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ANKRD60Q9BZ19 345 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PITPNM3Q9BZ71 974 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 UCK2Q9BZX2 261 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TRIM9Q9C026 710 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 HDHD2Q9H0R4 259 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MTIF3Q9H2K0 278 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 RIBC2Q9H4K1 309 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 WDR26Q9H7D7 661 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 NHEJ1Q9H9Q4 299 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 CXorf21Q9HAI6 301 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SEBOXQ9HB31 216 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 SEPSECSQ9HD40 501 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 NIT2Q9NQR4 276 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 XPNPEP1Q9NQW7 623 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RXFP3Q9NSD7 469 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 FAM207AQ9NSI2 230 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 SERTAD4Q9NUC0 356 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ZDHHC18Q9NUE0 388 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MCUBQ9NWR8 336 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SDHAF2Q9NX18 166 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 DPP3Q9NY33 737 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 NKIRAS1Q9NYS0 192 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 WARS2Q9UGM6 360 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 PCYOX1Q9UHG3 505 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 LGALS13Q9UHV8 139 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RIMS3Q9UJD0 308 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PURGQ9UJV8 347 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 GJD2Q9UKL4 321 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ELF5Q9UKW6 265 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 SCML1Q9UN30 329 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PSMD13Q9UNM6 376 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 FAM50BQ9Y247 325 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 KLHL20Q9Y2M5 609 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PCDHA10Q9Y5I2 948 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PCDHAC2Q9Y5I4 1007 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 NUBP2Q9Y5Y2 271 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PUS1Q9Y606 427 aaKnown RBP eCLIP3.11□□□□□ -1.91
VPS35-208ENST00000568612 CDY1Q9Y6F8 540 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 V9GYQ6 96 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ADGRB1O14514 1584 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 FRMPD2Q68DX3 1309 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 IGSF1Q8N6C5 1336 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 FER1L6Q2WGJ9 1857 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PIK3C2BO00750 1634 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms